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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS22485 and RS_RS22490 are separated by 36 nucleotides
RS_RS22490 and RS_RS22495 are separated by 19 nucleotides
RS_RS22495 and RS_RS22500 are separated by 177 nucleotides
RS_RS22500 and RS_RS22505 are separated by 214 nucleotides
RS_RS22485: RS_RS22485 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,406,849 to 1,408,165
_RS22485
RS_RS22490: RS_RS22490 - multidrug efflux RND transporter permease subunit, at 1,408,202 to 1,411,411
_RS22490
RS_RS22495: RS_RS22495 - RND transporter, at 1,411,431 to 1,412,957
_RS22495
RS_RS22500: RS_RS22500 - AraC family transcriptional regulator, at 1,413,135 to 1,413,947
_RS22500
RS_RS22505: RS_RS22505 - low specificity L-threonine aldolase, at 1,414,162 to 1,415,259
_RS22505
Group
Condition
RS
_RS22485
RS
_RS22490
RS
_RS22495
RS
_RS22500
RS
_RS22505
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-3.8
-4.0
-2.6
-0.4
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-3.6
-3.8
-2.4
+0.0
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.7
-1.8
-1.1
-0.0
-0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-1.7
-1.6
-0.9
-0.1
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-1.0
-0.9
-0.4
-0.1
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.9
-0.8
-0.1
-0.4
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.8
-1.0
-0.2
-0.2
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.8
-0.9
-0.3
-0.1
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.9
-0.7
+0.2
-0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.6
-0.8
-0.1
-0.0
+0.0
carbon source
L-Glutamine (C)
+0.1
-0.1
-0.2
-1.0
-0.1
carbon source
L-Aspartic Acid (C)
-0.0
-0.0
-0.0
-1.2
+0.0
carbon source
D-Glucose (C)
+0.0
-0.3
-0.5
-0.4
-0.1
stress
SMSA with Ralstonia_antibiotic_mix
-0.3
-0.3
-0.4
-0.2
-0.1
carbon source
pyruvate (C)
-0.2
-0.2
-0.1
-0.7
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.5
-0.3
-0.3
-0.1
-0.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.4
-0.5
-0.3
-0.1
+0.1
carbon source
L-Glutamic (C)
-0.2
-0.3
-0.1
-0.6
+0.1
carbon source
L-Glutamine (C)
-0.2
-0.3
-0.4
-0.5
+0.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.4
-0.6
-0.1
-0.2
+0.3
carbon source
L-Aspartic Acid (C)
+0.0
-0.1
-0.5
-0.6
+0.4
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.4
-0.3
+0.4
-0.0
-0.0
carbon source
L-Alanine (C)
-0.2
+0.3
-0.3
+0.2
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
-0.1
+0.2
+0.2
-0.7
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.3
-0.3
+0.2
+0.1
+0.7
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
+0.3
+0.0
-0.1
-0.4
+0.4
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
+0.6
+0.0
-0.2
-0.2
+0.3
in planta
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
-0.2
+0.4
+0.5
+0.3
in planta
Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.2
-0.0
+0.7
+0.9
+0.2
in planta
Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
+0.0
+0.5
+1.3
+0.3
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