Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS18235 and RS_RS18240 are separated by 98 nucleotidesRS_RS18240 and RS_RS18245 are separated by 15 nucleotidesRS_RS18245 and RS_RS18250 are separated by 15 nucleotidesRS_RS18250 and RS_RS18255 are separated by 288 nucleotides RS_RS18235: RS_RS18235 - crotonase, at 279,987 to 280,820 _RS18235 RS_RS18240: RS_RS18240 - salicylaldehyde dehydrogenase, at 280,919 to 282,373 _RS18240 RS_RS18245: RS_RS18245 - feruloyl-CoA synthase, at 282,389 to 284,263 _RS18245 RS_RS18250: RS_RS18250 - sigma-54-dependent Fis family transcriptional regulator, at 284,279 to 286,150 _RS18250 RS_RS18255: RS_RS18255 - benzaldehyde dehydrogenase, at 286,439 to 287,917 _RS18255
Group Condition RS_RS18235 RS_RS18240 RS_RS18245 RS_RS18250 RS_RS18255
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.1 +0.1 -0.1 -0.3 -1.9
carbon source L-Alanine (C) +0.2 +0.2 -0.1 +0.2 -1.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol +0.4 -0.8 -0.1 +0.0 -0.4
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -0.1 -0.7 -0.1 -0.3 +0.5
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.8 -0.8 +0.0 -0.3 -0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin +0.5 -0.3 +0.0 -0.1 -0.8
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.7 -0.2 -0.1 -0.0 -0.7
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.8 -0.2 -0.1 +0.0 -0.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.7 -0.5 -0.2 +0.1 +0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.9 -0.4 -0.1 +0.0 +0.1
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.2 -1.3 -0.0 +0.2 +0.4
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.0 -0.4 -0.0 -0.0 +0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.8 +0.4 +0.0 +0.4 -0.4
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +1.9 -0.1 +0.1 -0.3 -0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 -0.4 -0.0 -0.2 +1.0
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 +0.1 +0.2 -0.2 +0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.5 +0.4 -0.0 -0.0 -0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.8 +0.2 +0.1 +0.5 -0.1
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +1.8 -0.1 -0.0 +0.2 -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.0 -0.2 -0.0 +0.3 +0.4
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.2 -0.0 +0.0 +0.2 +0.2
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.9 +0.7 -0.1 +0.2 -0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +1.1 +0.1 +0.0 +0.4 +0.1
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.4 +0.7 +0.1 +0.5 +0.0
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.2 +0.2 +0.0 +0.1 +0.6
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.6 +0.1 +0.2 +0.0 +0.6
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +2.1 +0.4 +0.1 +0.1 -0.1
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.7 +0.8 -0.0 +0.2 -0.1
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +2.2 -0.4 +0.2 +0.5 +0.3
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.4 +0.8 +0.2 -0.1 +0.6
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