Fitness for 5 genes in Ralstonia solanacearum GMI1000

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	RS_RS17310	RS_RS17315	RS_RS17320	RS_RS17325	RS_RS17330
stress	SMSA with Ralstonia_antibiotic_mix_minus_Penicillin	-0.7	-0.1	+0.0	-0.1	-2.7
in planta	Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi	-0.4	-0.3	+0.0	-0.0	-2.3
carbon source	L-Aspartic Acid (C)	-1.3	+0.3	-0.4	+0.1	-1.6
carbon source	pyruvate (C)	-1.3	+0.3	-0.2	+0.0	-1.6
in planta	Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	-1.4	-0.5	+0.2	-0.3	-0.7
smsa no antibiotic control	SMSA no antibiotic control	-1.1	-0.9	+0.0	-0.2	-0.4
survival	water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days	-0.6	-0.0	-0.5	-0.0	-1.3
survival	water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days	-0.3	-2.1	+0.0	-0.0	+0.0
carbon source	L-Alanine (C)	-0.9	+0.8	-0.3	-0.4	-1.6
carbon source	D-Glucose (C)	-0.7	+0.3	-0.4	-0.3	-1.1
m63_quarter_strength	M63_quarter_strength	-0.1	-0.2	+0.2	-0.1	-2.0
survival	water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days	-0.7	-1.5	+0.1	+0.2	-0.2
in planta	Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	-0.8	+0.1	+0.2	-0.3	-1.2
stress	SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol	+0.4	-0.4	+0.0	-0.5	-1.4
carbon source	succinate (C)	-0.5	+0.5	-0.2	+0.0	-1.6
carbon source	L-Glutamic (C)	-0.8	+0.8	-0.3	-0.4	-0.8
in planta	Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	-0.8	+0.8	-0.2	+0.0	-1.3
stress	SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet	-0.9	+0.8	-0.0	-0.4	-0.9
stress	SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet	+0.9	-1.5	+0.1	-0.1	-0.7
in planta	Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted	-0.1	+0.6	+0.4	-0.7	-1.1
in planta	Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	-1.9	-0.2	+0.0	-0.1	+1.4
carbon source	D-Galactose (C)	-0.7	+0.8	+0.3	-0.1	-0.6
in planta	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	+1.0	+0.1	-0.1	+0.2	-1.5
stress	SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride	+0.2	+1.5	+0.1	-0.2	-1.6
xylem sap	Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi	+0.5	+1.1	+0.2	+0.0	-1.5
in planta	Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted	+1.1	+0.7	+0.0	-0.0	-0.7
carbon source	succinate (C)	-0.2	+1.9	-0.1	-0.2	+0.2
in planta	Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted	+1.1	+0.7	+0.5	-0.0	-0.4
in planta	Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted	+1.6	+0.7	+0.0	+0.8	-1.1
in planta	Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct	-0.7	+1.6	-0.0	-0.4	+1.7