Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS16985 and RS_RS16990 are separated by 0 nucleotidesRS_RS16990 and RS_RS16995 are separated by 153 nucleotidesRS_RS16995 and RS_RS17000 overlap by 17 nucleotidesRS_RS17000 and RS_RS17005 are separated by 15 nucleotides RS_RS16985: RS_RS16985 - porin, at 3,654,900 to 3,656,030 _RS16985 RS_RS16990: RS_RS16990 - nitrate ABC transporter substrate-binding protein, at 3,656,031 to 3,657,077 _RS16990 RS_RS16995: RS_RS16995 - DNA-binding response regulator, at 3,657,231 to 3,657,905 _RS16995 RS_RS17000: RS_RS17000 - histidine kinase, at 3,657,889 to 3,659,368 _RS17000 RS_RS17005: RS_RS17005 - IS630 family transposase ISRso5, at 3,659,384 to 3,660,475 _RS17005
Group Condition RS_RS16985 RS_RS16990 RS_RS16995 RS_RS17000 RS_RS17005
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 -0.4 -0.5 -0.0 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 +0.1 -0.6 -0.4 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -0.2 -0.1 -0.3 -0.2 N.D.
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 -0.4 -0.1 -0.4 N.D.
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 -0.3 -0.3 +0.2 N.D.
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 -0.0 -0.3 -0.6 N.D.
carbon source L-Aspartic Acid (C) -0.1 -0.3 +0.2 -0.5 N.D.
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.2 -0.1 +0.1 -0.5 N.D.
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 -0.5 -0.1 -0.1 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.1 +0.0 -0.0 -0.6 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 -0.1 -0.1 -0.3 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 +0.1 +0.0 -0.4 N.D.
carbon source L-Glutamic (C) -0.1 -0.2 +0.0 -0.4 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.1 +0.3 -0.1 -0.6 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 +0.3 -0.4 -0.3 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.1 -0.1 -0.4 +0.1 N.D.
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.1 -0.1 +0.1 -0.4 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin +0.0 +0.2 -0.3 -0.2 N.D.
carbon source L-Alanine (C) +0.0 -0.3 -0.1 +0.3 N.D.
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 +0.3 -0.0 -0.2 N.D.
carbon source L-Alanine (C) -0.2 -0.3 +0.1 +0.2 N.D.
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -0.3 -0.0 -0.1 +0.4 N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.1 +0.2 -0.4 +0.0 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.0 +0.5 -0.2 -0.3 N.D.
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 +0.3 -0.2 +0.2 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.0 +0.6 -0.3 -0.2 N.D.
carbon source D-Glucose (C) -0.1 -0.2 +0.3 +0.3 N.D.
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.2 +0.2 +0.3 -0.1 N.D.
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.3 +0.3 -0.3 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.1 +0.3 +0.2 +0.1 N.D.
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