Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS16955 and RS_RS16960 are separated by 136 nucleotidesRS_RS16960 and RS_RS16965 are separated by 179 nucleotidesRS_RS16965 and RS_RS16970 are separated by 36 nucleotidesRS_RS16970 and RS_RS16975 are separated by 912 nucleotides RS_RS16955: RS_RS16955 - potassium-transporting ATPase subunit C, at 3,645,885 to 3,646,499 _RS16955 RS_RS16960: RS_RS16960 - sensor histidine kinase KdpD, at 3,646,636 to 3,649,449 _RS16960 RS_RS16965: RS_RS16965 - metal ABC transporter substrate-binding protein, at 3,649,629 to 3,650,375 _RS16965 RS_RS16970: RS_RS16970 - MetQ/NlpA family lipoprotein, at 3,650,412 to 3,651,218 _RS16970 RS_RS16975: RS_RS16975 - diguanylate cyclase, at 3,652,131 to 3,653,342 _RS16975
Group Condition RS_RS16955 RS_RS16960 RS_RS16965 RS_RS16970 RS_RS16975
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.4 -0.7 N.D. N.D. +0.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.8 -0.5 N.D. N.D. +0.2
survival water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days -0.4 -0.5 N.D. N.D. -0.1
carbon source succinate (C) -0.1 -0.1 N.D. N.D. -0.7
carbon source L-Aspartic Acid (C) -0.2 -0.4 N.D. N.D. -0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.5 +0.1 N.D. N.D. -0.3
survival Treatment=Stationary_phase_water_1week; Collection=outgrowth_in_cpg -0.3 +0.0 N.D. N.D. -0.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.2 -0.0 N.D. N.D. -0.8
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.5 +0.2 N.D. N.D. -0.3
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -0.3 N.D. N.D. -0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.4 -0.2 N.D. N.D. -0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin +0.3 +0.1 N.D. N.D. -0.4
carbon source L-Glutamic (C) +0.5 -0.1 N.D. N.D. -0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.4 +0.0 N.D. N.D. -0.3
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +0.1 N.D. N.D. -0.3
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 -0.5 N.D. N.D. +1.2
carbon source D-Glucose (C) -0.2 +0.1 N.D. N.D. +0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.3 +0.2 N.D. N.D. +0.6
carbon source Sucrose (C) -0.2 +0.1 N.D. N.D. +0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.0 -0.1 N.D. N.D. +0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.6 -0.2 N.D. N.D. +0.1
carbon source pyruvate (C) +0.2 -0.1 N.D. N.D. +0.4
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.1 +0.0 N.D. N.D. +0.6
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.1 +0.1 N.D. N.D. +0.5
carbon source L-Glutamine (C) +0.3 +0.2 N.D. N.D. +0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.5 +0.1 N.D. N.D. +0.1
carbon source Sucrose (C) +0.4 +0.3 N.D. N.D. +0.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days +0.3 +0.2 N.D. N.D. +0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.6 +0.0 N.D. N.D. +0.5
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.7 +0.2 N.D. N.D. +0.5
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