Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS16535 and RS_RS16540 are separated by 129 nucleotidesRS_RS16540 and RS_RS16545 are separated by 161 nucleotidesRS_RS16545 and RS_RS16550 are separated by 582 nucleotidesRS_RS16550 and RS_RS16555 are separated by 141 nucleotides RS_RS16535: RS_RS16535 - branched-chain amino acid ABC transporter substrate-binding protein, at 3,557,507 to 3,558,640 _RS16535 RS_RS16540: RS_RS16540 - trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase, at 3,558,770 to 3,562,747 _RS16540 RS_RS16545: RS_RS16545 - primosomal protein N', at 3,562,909 to 3,565,215 _RS16545 RS_RS16550: RS_RS16550 - uroporphyrinogen decarboxylase, at 3,565,798 to 3,566,892 _RS16550 RS_RS16555: RS_RS16555 - cupin domain-containing protein, at 3,567,034 to 3,567,501 _RS16555
Group Condition RS_RS16535 RS_RS16540 RS_RS16545 RS_RS16550 RS_RS16555
carbon source L-Aspartic Acid (C) -0.6 -0.1 N.D. N.D. -0.8
carbon source pyruvate (C) -0.2 -0.3 N.D. N.D. -0.9
carbon source Sucrose (C) -0.1 -0.2 N.D. N.D. -0.8
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.2 -0.7 N.D. N.D. -0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 -0.6 N.D. N.D. -0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days -0.2 -0.2 N.D. N.D. -0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 -0.1 N.D. N.D. -0.3
carbon source succinate (C) -0.1 -0.2 N.D. N.D. -0.5
smsa no antibiotic control SMSA no antibiotic control -0.1 -0.2 N.D. N.D. -0.5
carbon source L-Glutamic (C) +0.1 -0.3 N.D. N.D. -0.6
carbon source L-Alanine (C) -0.0 -0.0 N.D. N.D. -0.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 -0.8 N.D. N.D. +0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.1 -0.4 N.D. N.D. -0.5
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -0.5 N.D. N.D. -0.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days +0.1 +0.1 N.D. N.D. -0.5
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 -0.4 N.D. N.D. +0.4
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 -0.3 N.D. N.D. -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin +0.3 -0.1 N.D. N.D. -0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.5 -0.5 N.D. N.D. -0.0
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -0.5 N.D. N.D. +0.3
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.6 -0.4 N.D. N.D. -0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.2 -0.4 N.D. N.D. +0.3
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.5 -0.2 N.D. N.D. -0.2
cpg CPG -0.3 -0.1 N.D. N.D. +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.1 -0.3 N.D. N.D. +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.6 -0.1 N.D. N.D. -0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.3 -0.4 N.D. N.D. +0.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.2 -0.4 N.D. N.D. +0.6
carbon source L-Aspartic Acid (C) -0.2 -0.1 N.D. N.D. +0.8
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.6 -0.5 N.D. N.D. +0.7
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