Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS15580 and RS_RS15585 are separated by 160 nucleotidesRS_RS15585 and RS_RS15590 are separated by 90 nucleotidesRS_RS15590 and RS_RS15595 are separated by 132 nucleotidesRS_RS15595 and RS_RS15600 are separated by 172 nucleotides RS_RS15580: RS_RS15580 - Lrp/AsnC family transcriptional regulator, at 3,340,544 to 3,341,032 _RS15580 RS_RS15585: RS_RS15585 - 4-hydroxyphenylpyruvate dioxygenase, at 3,341,193 to 3,342,296 _RS15585 RS_RS15590: RS_RS15590 - calcium sensor EFh, at 3,342,387 to 3,342,971 _RS15590 RS_RS15595: RS_RS15595 - pilus assembly protein PilZ, at 3,343,104 to 3,343,790 _RS15595 RS_RS15600: RS_RS15600 - type II secretion system protein GspG, at 3,343,963 to 3,344,433 _RS15600
Group Condition RS_RS15580 RS_RS15585 RS_RS15590 RS_RS15595 RS_RS15600
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.5 -0.1 N.D. N.D. -3.7
survival water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days -0.6 -0.2 N.D. N.D. -3.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.6 +0.1 N.D. N.D. -2.9
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.2 +0.4 N.D. N.D. -3.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.0 +0.3 N.D. N.D. -2.9
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.6 +0.5 N.D. N.D. -1.7
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 +0.2 N.D. N.D. -2.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 +0.2 N.D. N.D. -1.5
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.6 +0.8 N.D. N.D. -2.8
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.0 +0.2 N.D. N.D. -1.7
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.3 +0.4 N.D. N.D. -2.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.4 +0.4 N.D. N.D. -1.9
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.1 +0.6 N.D. N.D. -1.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.3 N.D. N.D. -1.8
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.7 +0.5 N.D. N.D. -2.2
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 +0.6 N.D. N.D. -1.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet +0.3 +0.6 N.D. N.D. -1.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.0 +0.7 N.D. N.D. -1.3
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.4 +0.3 N.D. N.D. -1.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.3 +0.6 N.D. N.D. -1.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +0.5 N.D. N.D. -1.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.5 +0.2 N.D. N.D. -1.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted +0.5 +0.4 N.D. N.D. -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.6 +0.5 N.D. N.D. -1.1
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.3 +0.7 N.D. N.D. -1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +0.5 N.D. N.D. -1.0
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.4 +0.6 N.D. N.D. -0.8
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.5 +0.6 N.D. N.D. -0.9
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.8 +0.7 N.D. N.D. -0.8
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.7 +0.2 N.D. N.D. +1.3
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