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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS15295 and RS_RS15300 are separated by 140 nucleotides
RS_RS15300 and RS_RS15305 are separated by 47 nucleotides
RS_RS15305 and RS_RS15310 overlap by 14 nucleotides
RS_RS15310 and RS_RS15315 overlap by 4 nucleotides
RS_RS15295: RS_RS15295 - DeoR/GlpR transcriptional regulator, at 3,280,710 to 3,281,474
_RS15295
RS_RS15300: RS_RS15300 - glycerol-3-phosphate dehydrogenase, at 3,281,615 to 3,283,192
_RS15300
RS_RS15305: RS_RS15305 - ABC transporter ATP-binding protein, at 3,283,240 to 3,284,358
_RS15305
RS_RS15310: RS_RS15310 - ABC transporter ATP-binding protein, at 3,284,345 to 3,285,442
_RS15310
RS_RS15315: RS_RS15315 - sugar ABC transporter permease, at 3,285,439 to 3,286,329
_RS15315
Group
Condition
RS
_RS15295
RS
_RS15300
RS
_RS15305
RS
_RS15310
RS
_RS15315
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-0.6
-2.3
-0.4
-0.2
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.7
-2.2
-0.2
-0.1
-0.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
-0.7
-1.9
-0.3
-0.4
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-0.4
-2.2
-0.4
-0.1
-0.4
stress
SMSA with Ralstonia_antibiotic_mix
-0.1
-2.2
-0.3
-0.3
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.0
-2.4
-0.3
-0.1
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.0
-2.2
-0.4
-0.3
-0.2
stress
SMSA with Ralstonia_antibiotic_mix
+0.4
-2.4
-0.1
-0.4
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+1.0
-2.7
-0.2
-0.5
-0.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.6
-2.4
-0.3
-0.1
-0.4
smsa no antibiotic control
SMSA no antibiotic control
-0.1
-1.8
-0.2
-0.1
-0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
-0.2
-1.4
-0.4
-0.1
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+1.1
-2.5
-0.2
-0.1
-0.3
carbon source
L-Alanine (C)
-2.3
+0.2
+0.1
-0.0
-0.1
smsa no antibiotic control
SMSA no antibiotic control
+0.5
-1.6
-0.2
-0.6
-0.2
carbon source
D-Glucose (C)
-2.3
+0.3
+0.4
-0.1
-0.0
in planta
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-1.8
+0.5
-0.3
+0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.8
-1.3
-0.3
-0.4
-0.3
carbon source
L-Alanine (C)
-1.7
+0.3
+0.1
-0.3
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+0.5
-1.5
+0.0
-0.2
-0.1
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-1.0
+0.6
-0.2
-0.5
+0.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet
+1.2
-1.2
-0.4
-0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet
+1.6
-1.8
-0.2
-0.2
-0.3
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+1.2
-0.9
+0.0
-0.4
-0.3
carbon source
L-Glutamic (C)
+1.7
+0.0
-0.2
-0.3
-0.3
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.8
+0.8
+0.2
+0.4
+0.3
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.8
+0.9
-0.2
-0.3
+0.1
in planta
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.7
+0.6
-0.2
-0.0
-0.5
in planta
Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.8
+0.4
+0.2
+0.9
-0.3
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.8
+0.4
-0.2
+0.5
+0.3
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