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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS14815 and RS_RS14820 are separated by 234 nucleotides
RS_RS14820 and RS_RS14825 are separated by 66 nucleotides
RS_RS14825 and RS_RS14830 are separated by 154 nucleotides
RS_RS14830 and RS_RS14835 are separated by 3 nucleotides
RS_RS14815: RS_RS14815 - ABC transporter ATP-binding protein, at 3,184,945 to 3,185,910
_RS14815
RS_RS14820: RS_RS14820 - STAS domain-containing protein, at 3,186,145 to 3,186,459
_RS14820
RS_RS14825: RS_RS14825 - hypothetical protein, at 3,186,526 to 3,187,161
_RS14825
RS_RS14830: RS_RS14830 - ABC transporter, at 3,187,316 to 3,188,125
_RS14830
RS_RS14835: RS_RS14835 - outer membrane lipid asymmetry maintenance protein MlaD, at 3,188,129 to 3,188,650
_RS14835
Group
Condition
RS
_RS14815
RS
_RS14820
RS
_RS14825
RS
_RS14830
RS
_RS14835
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
-2.4
-2.9
-5.4
-6.0
-5.5
stress
SMSA with Ralstonia_antibiotic_mix
+0.7
-3.1
-6.5
-6.6
-6.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
-0.4
-2.6
-6.1
-6.4
-6.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin
+0.3
-2.9
-6.4
-5.9
-6.3
stress
SMSA with Ralstonia_antibiotic_mix
+0.3
-2.5
-6.3
-6.5
-6.1
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.7
-4.0
-5.7
-6.3
-5.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
-1.0
-2.8
-5.4
-5.7
-5.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
+0.4
-3.1
-6.1
-5.8
-5.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
-0.7
-2.9
-5.1
-5.6
-5.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Penicillin
+0.4
-4.0
-4.8
-5.1
-4.9
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol
+0.3
-2.3
-5.0
-4.9
-5.4
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.4
-2.6
-4.3
-4.9
-4.4
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.1
-4.2
-3.2
-3.2
-5.0
stress
SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin
+0.3
-1.6
-4.5
-4.5
-4.9
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.4
-2.9
-3.5
-3.3
-4.4
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
-0.1
-3.7
-3.2
-3.0
-4.4
in planta
Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.9
-3.1
-3.6
-3.4
-3.7
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
+0.9
-3.8
-3.3
-3.3
-3.1
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
+0.5
-2.1
-3.2
-3.0
-4.6
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.6
-2.3
-3.4
-3.2
-3.0
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
-0.4
-2.7
-2.5
-2.4
-4.5
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
+0.2
-2.3
-3.5
-3.6
-2.9
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
-2.1
-1.1
-3.0
-2.7
-3.0
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
-1.5
-1.1
-3.4
-2.9
-2.9
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.5
-1.4
-3.5
-3.2
-4.0
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+1.9
-2.5
-3.4
-3.6
-3.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.8
-1.7
-3.1
-3.7
-3.4
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.5
+1.4
-3.4
-3.2
-3.5
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
+0.7
+2.4
+3.8
+3.8
+3.2
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
-2.0
+3.2
+4.4
+4.4
+4.1
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