Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS14380 and RS_RS14385 are separated by 602 nucleotidesRS_RS14385 and RS_RS14390 are separated by 79 nucleotidesRS_RS14390 and RS_RS14395 overlap by 4 nucleotidesRS_RS14395 and RS_RS14400 are separated by 65 nucleotides RS_RS14380: RS_RS14380 - 16S ribosomal RNA, at 3,099,489 to 3,101,033 _RS14380 RS_RS14385: RS_RS14385 - enoyl-CoA hydratase, at 3,101,636 to 3,102,412 _RS14385 RS_RS14390: RS_RS14390 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase, at 3,102,492 to 3,103,280 _RS14390 RS_RS14395: RS_RS14395 - phenylacetic acid degradation protein PaaD, at 3,103,277 to 3,103,744 _RS14395 RS_RS14400: RS_RS14400 - phenylacetate--CoA ligase, at 3,103,810 to 3,105,120 _RS14400
Group Condition RS_RS14380 RS_RS14385 RS_RS14390 RS_RS14395 RS_RS14400
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -0.7 N.D. -0.8 +0.0
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -0.6 N.D. -0.8 -0.0
carbon source L-Aspartic Acid (C) N.D. -0.3 N.D. -1.1 +0.0
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -0.8 N.D. -0.7 +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. -0.1 N.D. -1.0 -0.1
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +0.1 N.D. -1.3 +0.3
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -1.1 N.D. +0.1 +0.3
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi N.D. +0.3 N.D. -0.9 +0.1
carbon source L-Glutamine (C) N.D. +0.3 N.D. -1.1 +0.3
carbon source L-Aspartic Acid (C) N.D. -0.4 N.D. +0.4 -0.4
carbon source D-Galactose (C) N.D. -1.0 N.D. +0.7 +0.0
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi N.D. +0.5 N.D. -0.4 -0.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. +0.2 N.D. +0.5 -0.3
carbon source pyruvate (C) N.D. +0.0 N.D. +0.8 -0.3
carbon source D-Glucose (C) N.D. -0.4 N.D. +1.0 +0.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. +0.4 N.D. +0.5 -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days N.D. +0.8 N.D. -0.3 +0.3
survival Treatment=Stationary_phase_water_1week; Collection=outgrowth_in_cpg N.D. +0.6 N.D. +0.4 -0.1
cpg CPG N.D. +0.1 N.D. +0.8 +0.2
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -0.2 N.D. +1.1 +0.2
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi N.D. +0.1 N.D. +1.3 -0.2
carbon source L-Alanine (C) N.D. +0.2 N.D. +0.9 +0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days N.D. +0.7 N.D. +0.6 -0.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. +0.2 N.D. +1.2 +0.0
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi N.D. +0.3 N.D. +0.8 +0.4
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. +0.4 N.D. +1.1 +0.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +0.1 N.D. +0.8 +0.6
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +0.8 N.D. +0.7 +0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +0.7 N.D. +1.3 -0.0
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.4 N.D. +3.5 +0.3
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