Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS14030 and RS_RS14035 overlap by 8 nucleotidesRS_RS14035 and RS_RS14040 are separated by 26 nucleotidesRS_RS14040 and RS_RS14045 overlap by 4 nucleotidesRS_RS14045 and RS_RS14050 are separated by 37 nucleotides RS_RS14030: RS_RS14030 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 3,018,877 to 3,019,479 _RS14030 RS_RS14035: RS_RS14035 - sigma-54-dependent Fis family transcriptional regulator, at 3,019,472 to 3,021,154 _RS14035 RS_RS14040: RS_RS14040 - two-component sensor histidine kinase, at 3,021,181 to 3,023,229 _RS14040 RS_RS14045: RS_RS14045 - hypothetical protein, at 3,023,226 to 3,023,486 _RS14045 RS_RS14050: RS_RS14050 - inner membrane protein YpjD, at 3,023,524 to 3,024,435 _RS14050
Group Condition RS_RS14030 RS_RS14035 RS_RS14040 RS_RS14045 RS_RS14050
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -0.5 -0.0 N.D. -3.0
carbon source L-Aspartic Acid (C) N.D. -2.2 -0.7 N.D. -0.5
carbon source pyruvate (C) N.D. -2.2 -0.9 N.D. -0.3
survival water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days N.D. -1.0 -0.2 N.D. -1.9
carbon source D-Glucose (C) N.D. -2.0 -1.2 N.D. +0.2
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days N.D. -1.6 -0.2 N.D. -1.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin N.D. -1.6 -1.0 N.D. -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. -1.0 -1.2 N.D. -0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. +0.0 -0.2 N.D. -2.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride N.D. -1.6 -0.8 N.D. -0.2
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -0.9 -0.1 N.D. -1.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days N.D. -0.8 -0.2 N.D. -1.3
carbon source pyruvate (C) N.D. -1.0 -0.7 N.D. -0.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. +0.4 -0.1 N.D. -2.2
carbon source L-Glutamine (C) N.D. -1.4 -0.3 N.D. +0.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. +0.4 +0.1 N.D. -1.7
carbon source Sucrose (C) N.D. +0.6 +0.3 N.D. -1.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. +1.1 +0.4 N.D. -1.6
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +1.3 +0.1 N.D. -0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +1.0 +0.5 N.D. -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +0.9 +0.7 N.D. -0.5
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +1.4 +0.7 N.D. -0.9
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. +1.0 +0.9 N.D. -0.6
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +1.7 +1.1 N.D. -1.0
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +1.6 +0.8 N.D. -0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. +0.6 +1.8 N.D. +0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +2.7 +1.9 N.D. -1.7
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +2.6 +1.7 N.D. -1.3
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. +2.1 +1.6 N.D. -0.7
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. +2.8 +1.5 N.D. -0.6
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