Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS13805 and RS_RS13810 are separated by 34 nucleotidesRS_RS13810 and RS_RS13815 are separated by 164 nucleotidesRS_RS13815 and RS_RS13820 are separated by 74 nucleotidesRS_RS13820 and RS_RS13825 are separated by 20 nucleotides RS_RS13805: RS_RS13805 - 2-dehydro-3-deoxygalactonokinase, at 2,971,015 to 2,972,010 _RS13805 RS_RS13810: RS_RS13810 - porin, at 2,972,045 to 2,973,106 _RS13810 RS_RS13815: RS_RS13815 - transcriptional regulator GcvA, at 2,973,271 to 2,974,197 _RS13815 RS_RS13820: RS_RS13820 - VOC family protein, at 2,974,272 to 2,974,697 _RS13820 RS_RS13825: RS_RS13825 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 2,974,718 to 2,975,467 _RS13825
Group Condition RS_RS13805 RS_RS13810 RS_RS13815 RS_RS13820 RS_RS13825
carbon source D-Galactose (C) -2.9 -5.0 -2.8 +0.2 +0.3
carbon source D-Galactose (C) -3.3 -3.2 -3.4 -0.1 +0.2
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.8 -0.0 +0.1 -0.5 -0.6
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 -0.1 -0.2 -0.1 -1.8
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.1 -0.3 -0.2 -0.5 -2.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet -1.1 +0.1 -0.2 +0.2 -0.6
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.0 -0.3 +0.8 -0.4 -0.7
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.9 -0.3 +0.7 -1.3 -1.6
carbon source D-Glucose (C) -1.7 +0.2 -0.9 +0.5 +0.6
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -1.4 -0.1 +0.3 -0.4 +0.6
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 +0.4 +0.8 -0.7 -1.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.8 +0.0 +0.2 -0.1 -1.5
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 +0.2 +0.6 -0.4 -1.0
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.1 +0.2 +0.6 -0.3 -1.9
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.4 +0.1 +0.9 -1.4 -1.1
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.8 -0.3 +0.3 -1.4 +0.4
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.5 -0.0 +0.1 +0.3 -1.1
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.9 -0.0 +0.1 +0.4 +0.7
carbon source D-Glucose (C) -0.8 +0.0 -0.4 +0.2 +1.5
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.3 -0.5 -0.3 +0.1 +1.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +1.2 -0.2 +0.4 +0.3 -0.8
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.8 +0.0 -0.0 -0.8 +1.0
carbon source L-Glutamic (C) +0.3 +0.0 -0.5 +0.1 +1.1
carbon source succinate (C) +0.5 -0.3 -0.3 +0.3 +0.9
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +1.3 -0.2 +0.1 +0.4 -0.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.5 -0.1 +0.4 +0.1 +1.5
survival water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days +0.4 -0.0 +0.4 -0.1 +1.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.5 -0.3 +0.5 -0.1 +1.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.5 +0.1 +0.4 +0.0 +1.3
carbon source pyruvate (C) +1.2 +0.3 -0.3 +0.4 +1.4
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