Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS11000 and RS_RS11005 overlap by 4 nucleotidesRS_RS11005 and RS_RS11010 are separated by 50 nucleotidesRS_RS11010 and RS_RS11015 are separated by 21 nucleotidesRS_RS11015 and RS_RS11020 are separated by 2 nucleotides RS_RS11000: RS_RS11000 - coproporphyrinogen III oxidase, at 2,374,827 to 2,375,735 _RS11000 RS_RS11005: RS_RS11005 - nicotinate-nucleotide adenylyltransferase, at 2,375,732 to 2,376,427 _RS11005 RS_RS11010: RS_RS11010 - ribosome silencing factor, at 2,376,478 to 2,377,089 _RS11010 RS_RS11015: RS_RS11015 - 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH, at 2,377,111 to 2,377,581 _RS11015 RS_RS11020: RS_RS11020 - septum formation inhibitor Maf, at 2,377,584 to 2,378,207 _RS11020
Group Condition RS_RS11000 RS_RS11005 RS_RS11010 RS_RS11015 RS_RS11020
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. -6.5 +0.3 N.D. -0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. -5.8 -0.1 N.D. -0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. -6.4 +0.6 N.D. -0.7
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. -5.7 -0.2 N.D. -0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -4.8 -0.7 N.D. +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -4.5 -0.2 N.D. -0.4
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -4.5 -0.4 N.D. -0.2
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -3.5 -0.7 N.D. -0.7
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted N.D. -5.3 +0.5 N.D. +0.2
carbon source L-Aspartic Acid (C) N.D. -4.1 -0.3 N.D. -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -4.1 +0.4 N.D. -0.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. -4.6 +0.2 N.D. +0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. -4.5 +0.5 N.D. -0.1
carbon source Sucrose (C) N.D. -3.2 -0.4 N.D. -0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. -3.7 -0.0 N.D. -0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_CrystalViolet N.D. -2.4 -1.2 N.D. -0.1
carbon source Sucrose (C) N.D. -3.7 -0.4 N.D. +0.3
carbon source L-Glutamine (C) N.D. -2.3 -1.3 N.D. -0.1
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.6 -0.5 N.D. -0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. -3.4 +0.4 N.D. -0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days N.D. -3.5 -0.4 N.D. +0.2
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -2.4 -0.7 N.D. -0.5
carbon source L-Aspartic Acid (C) N.D. -3.5 +0.3 N.D. -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. -3.5 +0.1 N.D. -0.1
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.8 +0.4 N.D. -0.7
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. -3.4 +0.7 N.D. -0.3
stress SMSA with Ralstonia_antibiotic_mix N.D. -3.2 +0.4 N.D. -0.2
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -2.2 +0.4 N.D. -1.0
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. -3.4 +1.1 N.D. +0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. -2.7 +1.1 N.D. -0.3
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