Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS10055 and RS_RS10060 are separated by 24 nucleotidesRS_RS10060 and RS_RS10065 are separated by 63 nucleotidesRS_RS10065 and RS_RS10070 are separated by 186 nucleotidesRS_RS10070 and RS_RS10075 are separated by 76 nucleotides RS_RS10055: RS_RS10055 - hypothetical protein, at 2,178,037 to 2,178,594 _RS10055 RS_RS10060: RS_RS10060 - bifunctional 2-methylcitrate dehydratase/aconitate hydratase, at 2,178,619 to 2,180,085 _RS10060 RS_RS10065: RS_RS10065 - aconitate hydratase AcnA, at 2,180,149 to 2,182,854 _RS10065 RS_RS10070: RS_RS10070 - hypothetical protein, at 2,183,041 to 2,183,262 _RS10070 RS_RS10075: RS_RS10075 - DUF2863 domain-containing protein, at 2,183,339 to 2,184,550 _RS10075
Group Condition RS_RS10055 RS_RS10060 RS_RS10065 RS_RS10070 RS_RS10075
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -2.5 -3.0 -7.3 +0.1 -3.4
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -4.2 -2.8 -6.9 +0.1 -1.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -2.2 -2.3 -7.5 -0.1 -2.3
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -2.5 -1.7 -7.1 +0.1 -1.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -1.7 -2.6 -5.2 +0.2 -1.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -1.7 -1.9 -5.2 -0.3 -1.6
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -2.3 -1.6 -4.5 -0.2 -1.5
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -1.3 -1.8 -5.2 -0.0 -1.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -1.0 -1.6 -4.0 -0.2 -1.5
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -1.3 -1.9 -3.3 -0.2 -1.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -2.0 -1.6 -2.9 +0.1 -1.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=7_days -1.6 -1.4 -3.1 -0.5 -1.2
survival water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days -1.0 -0.7 -3.5 -0.0 -0.4
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.0 +0.2 +0.4 -1.3 -4.0
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.6 -0.1 +0.6 -1.4 -3.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.4 +0.5 +0.7 -0.9 -4.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +0.5 +0.8 -0.8 -4.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.0 +0.9 +0.5 -1.3 -3.5
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -1.2 +0.7 +1.1 -0.2 -3.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.3 +0.6 +0.9 -0.5 -3.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.0 +1.0 +1.2 -0.8 -3.7
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.4 +0.6 +1.1 +0.2 -3.7
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.9 +0.4 +0.8 -0.9 -3.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -1.7 +0.9 +1.4 -0.2 -2.2
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.6 +1.3 +1.0 -0.4 -3.9
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.7 +0.3 +1.0 -0.8 -2.5
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.3 +1.2 +1.1 -0.3 -2.9
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.9 +0.5 +1.4 -0.3 -2.3
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.9 +1.5 +1.4 -1.0 -2.1
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.0 +1.7 +1.3 -0.2 -1.8
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