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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS09930 and RS_RS09935 are separated by 94 nucleotides
RS_RS09935 and RS_RS09940 are separated by 72 nucleotides
RS_RS09940 and RS_RS09945 are separated by 86 nucleotides
RS_RS09945 and RS_RS09950 are separated by 81 nucleotides
RS_RS09930: RS_RS09930 - amidophosphoribosyltransferase, at 2,150,306 to 2,151,841
_RS09930
RS_RS09935: RS_RS09935 - colicin V biosynthesis protein, at 2,151,936 to 2,152,433
_RS09935
RS_RS09940: RS_RS09940 - SPOR domain-containing protein, at 2,152,506 to 2,153,327
_RS09940
RS_RS09945: RS_RS09945 - bifunctional tetrahydrofolate synthase/dihydrofolate synthase, at 2,153,414 to 2,154,712
_RS09945
RS_RS09950: RS_RS09950 - acetyl-CoA carboxylase carboxyltransferase subunit beta, at 2,154,794 to 2,155,666
_RS09950
Group
Condition
RS
_RS09930
RS
_RS09935
RS
_RS09940
RS
_RS09945
RS
_RS09950
in planta
Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
-1.9
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
N.D.
-1.5
N.D.
N.D.
N.D.
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
N.D.
-1.5
N.D.
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
N.D.
-1.4
N.D.
N.D.
N.D.
carbon source
L-Aspartic Acid (C)
N.D.
-1.3
N.D.
N.D.
N.D.
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-1.2
N.D.
N.D.
N.D.
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
N.D.
-1.1
N.D.
N.D.
N.D.
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
N.D.
-1.1
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
N.D.
-0.9
N.D.
N.D.
N.D.
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
-0.9
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
-0.9
N.D.
N.D.
N.D.
carbon source
Sucrose (C)
N.D.
-0.8
N.D.
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol
N.D.
-0.7
N.D.
N.D.
N.D.
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days
N.D.
-0.7
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
N.D.
-0.6
N.D.
N.D.
N.D.
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
-0.6
N.D.
N.D.
N.D.
carbon source
L-Glutamic (C)
N.D.
-0.6
N.D.
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet
N.D.
+0.6
N.D.
N.D.
N.D.
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
N.D.
+0.7
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
+0.7
N.D.
N.D.
N.D.
stress
SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet
N.D.
+0.7
N.D.
N.D.
N.D.
carbon source
L-Glutamine (C)
N.D.
+0.8
N.D.
N.D.
N.D.
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
N.D.
+0.8
N.D.
N.D.
N.D.
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
N.D.
+0.8
N.D.
N.D.
N.D.
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
N.D.
+0.8
N.D.
N.D.
N.D.
carbon source
D-Galactose (C)
N.D.
+0.9
N.D.
N.D.
N.D.
carbon source
succinate (C)
N.D.
+1.0
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
N.D.
+1.0
N.D.
N.D.
N.D.
in planta
Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
N.D.
+1.1
N.D.
N.D.
N.D.
carbon source
L-Alanine (C)
N.D.
+2.4
N.D.
N.D.
N.D.
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