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Cofit
Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS09140 and RS_RS09145 are separated by 89 nucleotides
RS_RS09145 and RS_RS09150 are separated by 74 nucleotides
RS_RS09150 and RS_RS09155 are separated by 1044 nucleotides
RS_RS09155 and RS_RS09160 are separated by 256 nucleotides
RS_RS09140: RS_RS09140 - non-ribosomal peptide synthetase, at 1,972,550 to 1,978,570
_RS09140
RS_RS09145: RS_RS09145 - hypothetical protein, at 1,978,660 to 1,979,076
_RS09145
RS_RS09150: RS_RS09150 - AraC family transcriptional regulator, at 1,979,151 to 1,980,062
_RS09150
RS_RS09155: RS_RS09155 - hypothetical protein, at 1,981,107 to 1,984,844
_RS09155
RS_RS09160: RS_RS09160 - N-acetyltransferase, at 1,985,101 to 1,985,547
_RS09160
Group
Condition
RS
_RS09140
RS
_RS09145
RS
_RS09150
RS
_RS09155
RS
_RS09160
m63_quarter_strength
M63_quarter_strength
-1.0
-1.5
-0.5
-0.2
-0.4
m63_quarter_strength
M63_quarter_strength
-1.0
-1.4
-0.7
-0.1
-0.3
m63_quarter_strength
M63_quarter_strength
-0.8
-1.6
-0.6
-0.0
-0.2
carbon source
D-Galactose (C)
-0.2
-0.6
-0.6
-0.5
-0.7
carbon source
D,L-Malic Acid (C)
+0.1
-1.3
-0.6
-0.1
-0.1
in planta
Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.2
-0.6
-0.4
+0.1
-0.3
carbon source
D-Glucose (C)
-0.0
-0.4
+0.2
-0.0
-1.0
carbon source
D-Glucose (C)
+0.1
-0.4
-0.5
-0.3
-0.0
carbon source
L-Aspartic Acid (C)
+0.0
-0.1
-0.2
-0.1
-0.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.0
-0.5
-0.2
-0.0
-0.2
carbon source
L-Glutamine (C)
+0.2
-0.3
-0.7
-0.0
-0.0
carbon source
pyruvate (C)
+0.2
-0.3
-0.1
-0.4
-0.2
carbon source
L-Alanine (C)
-0.2
-0.4
+0.2
-0.1
-0.2
carbon source
L-Aspartic Acid (C)
+0.0
+0.2
-0.7
+0.1
-0.3
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
-0.2
+0.1
+0.1
-0.2
-0.4
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
-0.1
-0.4
+0.2
-0.0
-0.2
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.1
+0.1
+0.1
+0.1
-0.7
carbon source
succinate (C)
+0.1
-1.0
-0.0
-0.1
+0.6
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
-0.3
-0.4
+0.2
+0.0
-0.0
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
-0.3
-0.5
+0.3
-0.1
+0.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.2
-0.3
+0.4
-0.1
+0.1
carbon source
L-Glutamine (C)
+0.0
+0.1
+0.1
+0.3
-0.5
carbon source
L-Glutamic (C)
+0.5
+0.1
-0.7
-0.2
+0.2
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.3
+0.5
+0.0
-0.3
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted
-0.1
+0.7
-0.0
+0.1
-0.4
carbon source
Sucrose (C)
+0.0
-0.3
-0.0
+0.1
+0.7
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.2
+0.2
-0.1
+0.0
+0.4
carbon source
succinate (C)
-0.1
+0.4
+0.2
+0.4
+0.1
carbon source
Sucrose (C)
-0.0
+0.4
-0.1
-0.2
+0.9
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.0
+0.5
+0.2
+0.2
+0.3
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