Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS08270 and RS_RS08275 are separated by 34 nucleotidesRS_RS08275 and RS_RS08280 are separated by 171 nucleotidesRS_RS08280 and RS_RS08285 overlap by 4 nucleotidesRS_RS08285 and RS_RS08290 are separated by 79 nucleotides RS_RS08270: RS_RS08270 - acetylornithine deacetylase, at 1,763,076 to 1,764,269 _RS08270 RS_RS08275: RS_RS08275 - transcription-repair coupling factor, at 1,764,304 to 1,767,735 _RS08275 RS_RS08280: RS_RS08280 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,767,907 to 1,768,668 _RS08280 RS_RS08285: RS_RS08285 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,768,665 to 1,769,171 _RS08285 RS_RS08290: RS_RS08290 - carboxymuconolactone decarboxylase family protein, at 1,769,251 to 1,769,778 _RS08290
Group Condition RS_RS08270 RS_RS08275 RS_RS08280 RS_RS08285 RS_RS08290
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 -0.6 N.D. N.D. -0.5
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.1 -1.1 N.D. N.D. -0.0
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.2 -0.7 N.D. N.D. -0.3
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride +0.2 -1.7 N.D. N.D. +0.3
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 -0.8 N.D. N.D. -0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 -0.6 N.D. N.D. -0.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 -0.6 N.D. N.D. -0.4
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -1.5 N.D. N.D. +0.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.2 -0.6 N.D. N.D. -0.1
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 -0.8 N.D. N.D. +0.1
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 -0.6 N.D. N.D. +0.2
carbon source D-Galactose (C) +0.1 -0.5 N.D. N.D. -0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 -0.9 N.D. N.D. +0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.0 -0.6 N.D. N.D. -0.3
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 -0.7 N.D. N.D. +0.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin -0.3 -0.8 N.D. N.D. +0.4
carbon source Sucrose (C) +0.1 -0.8 N.D. N.D. +0.2
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.0 -0.7 N.D. N.D. +0.2
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.1 -0.7 N.D. N.D. +0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.3 -0.5 N.D. N.D. +0.3
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.1 -0.8 N.D. N.D. +0.3
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days +0.1 -0.7 N.D. N.D. +0.3
carbon source D-Glucose (C) -0.1 -0.7 N.D. N.D. +0.4
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.0 -0.9 N.D. N.D. +0.6
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 -0.9 N.D. N.D. +0.5
in planta Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -0.7 N.D. N.D. +0.4
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.3 -1.0 N.D. N.D. +0.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 -0.8 N.D. N.D. +0.5
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 -0.3 N.D. N.D. +0.3
carbon source L-Alanine (C) +0.6 -0.4 N.D. N.D. +0.4
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