Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS06595 and RS_RS06600 are separated by 117 nucleotidesRS_RS06600 and RS_RS06605 are separated by 431 nucleotidesRS_RS06605 and RS_RS06610 are separated by 107 nucleotidesRS_RS06610 and RS_RS06615 are separated by 22 nucleotides RS_RS06595: RS_RS06595 - hypothetical protein, at 1,399,966 to 1,400,391 _RS06595 RS_RS06600: RS_RS06600 - PhoH family protein, at 1,400,509 to 1,402,227 _RS06600 RS_RS06605: RS_RS06605 - peroxiredoxin, at 1,402,659 to 1,403,123 _RS06605 RS_RS06610: RS_RS06610 - 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase, at 1,403,231 to 1,404,124 _RS06610 RS_RS06615: RS_RS06615 - bifunctional UDP-4-keto-pentose/UDP-xylose synthase, at 1,404,147 to 1,405,202 _RS06615
Group Condition RS_RS06595 RS_RS06600 RS_RS06605 RS_RS06610 RS_RS06615
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.1 -2.6 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.9 -1.1 N.D. N.D. N.D.
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -1.6 N.D. N.D. N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.0 -1.4 N.D. N.D. N.D.
carbon source D,L-Malic Acid (C) -0.3 -1.1 N.D. N.D. N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.2 -1.5 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.8 -0.4 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.7 -0.5 N.D. N.D. N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.1 -1.1 N.D. N.D. N.D.
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 -1.0 N.D. N.D. N.D.
carbon source L-Aspartic Acid (C) -0.4 -0.5 N.D. N.D. N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.0 -0.9 N.D. N.D. N.D.
smsa no antibiotic control SMSA no antibiotic control -0.5 -0.3 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted -0.3 -0.4 N.D. N.D. N.D.
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.5 -0.1 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.6 -0.1 N.D. N.D. N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.4 -0.2 N.D. N.D. N.D.
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 -0.6 N.D. N.D. N.D.
carbon source D-Galactose (C) +0.3 -0.6 N.D. N.D. N.D.
carbon source L-Alanine (C) +0.4 -0.5 N.D. N.D. N.D.
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi +0.4 -0.6 N.D. N.D. N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 +0.3 N.D. N.D. N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet +0.3 -0.4 N.D. N.D. N.D.
carbon source L-Glutamic (C) +0.7 -0.7 N.D. N.D. N.D.
carbon source L-Glutamic (C) +0.3 -0.3 N.D. N.D. N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol_and_CrystalViolet -0.3 +0.4 N.D. N.D. N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days +0.4 +0.3 N.D. N.D. N.D.
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.1 -0.0 N.D. N.D. N.D.
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 +1.1 N.D. N.D. N.D.
carbon source pyruvate (C) +0.0 +1.9 N.D. N.D. N.D.
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