Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS06030 and RS_RS06035 are separated by 15 nucleotidesRS_RS06035 and RS_RS06040 are separated by 1 nucleotidesRS_RS06040 and RS_RS06045 are separated by 8 nucleotidesRS_RS06045 and RS_RS06050 are separated by 33 nucleotides RS_RS06030: RS_RS06030 - 5'-nucleotidase SurE, at 1,272,903 to 1,273,658 _RS06030 RS_RS06035: RS_RS06035 - protein-L-isoaspartate O-methyltransferase, at 1,273,674 to 1,274,639 _RS06035 RS_RS06040: RS_RS06040 - LysM peptidoglycan-binding domain-containing protein, at 1,274,641 to 1,275,468 _RS06040 RS_RS06045: RS_RS06045 - RNA polymerase sigma factor RpoS, at 1,275,477 to 1,276,610 _RS06045 RS_RS06050: RS_RS06050 - EEP domain-containing protein, at 1,276,644 to 1,277,513 _RS06050
Group Condition RS_RS06030 RS_RS06035 RS_RS06040 RS_RS06045 RS_RS06050
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.5 -1.0 -2.7 -7.6 -0.6
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.5 -0.8 -1.8 -8.5 +0.1
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.3 -0.5 -2.4 -9.2 +0.5
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days +0.1 +0.1 -2.0 -2.9 +0.8
carbon source L-Aspartic Acid (C) -0.6 -2.4 -1.8 +1.7 +0.3
carbon source L-Glutamine (C) -0.2 -2.6 -0.9 +1.7 +0.2
carbon source D-Glucose (C) -0.6 -2.2 -1.5 +2.0 +0.7
carbon source D,L-Malic Acid (C) +0.3 -2.6 -1.0 +1.7 +0.2
carbon source pyruvate (C) -0.3 -3.5 +0.9 +2.0 +0.4
carbon source D-Galactose (C) -0.6 -1.0 -0.9 +3.2 +0.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.8 -2.3 -0.2 +4.6 +0.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.2 -3.3 +0.9 +5.0 +0.3
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.9 +0.1 +0.3 +4.7 -1.1
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 -1.4 +0.2 +4.9 -0.2
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.9 -0.4 +1.0 +3.3 +0.4
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.7 -0.4 +1.0 +3.8 +0.0
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.8 -2.7 +2.1 +4.6 +0.4
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.7 -0.5 +0.7 +3.8 +0.4
carbon source D-Galactose (C) -0.6 -1.0 +0.0 +3.2 +2.0
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.8 -0.3 +0.3 +4.6 +0.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.5 -0.3 +1.0 +3.2 +0.5
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=roots; Collection=Homogenized_filtered_pelleted -0.1 -1.0 +1.3 +3.7 +0.5
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.3 -0.7 +1.5 +6.1 +0.2
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.8 -0.7 +2.1 +5.4 +0.0
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.8 -0.8 +0.2 +6.4 -0.4
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.1 -0.9 +1.9 +5.9 +0.4
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 -0.9 +1.8 +6.8 +0.0
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +1.4 -0.3 +0.0 +6.9 +0.1
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +2.0 -2.7 +1.7 +7.3 -0.2
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.0 -0.4 +3.4 +5.8 -0.5
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