Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS05290 and RS_RS05295 are separated by 114 nucleotidesRS_RS05295 and RS_RS05300 are separated by 122 nucleotidesRS_RS05300 and RS_RS05305 are separated by 82 nucleotidesRS_RS05305 and RS_RS05310 are separated by 68 nucleotides RS_RS05290: RS_RS05290 - beta-N-acetylhexosaminidase, at 1,120,323 to 1,121,375 _RS05290 RS_RS05295: RS_RS05295 - elongation factor P, at 1,121,490 to 1,122,050 _RS05295 RS_RS05300: RS_RS05300 - elongation factor P maturation arginine rhamnosyltransferase EarP, at 1,122,173 to 1,123,363 _RS05300 RS_RS05305: RS_RS05305 - excinuclease ABC subunit UvrC, at 1,123,446 to 1,125,455 _RS05305 RS_RS05310: RS_RS05310 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,125,524 to 1,126,099 _RS05310
Group Condition RS_RS05290 RS_RS05295 RS_RS05300 RS_RS05305 RS_RS05310
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -6.1 N.D. N.D. -0.6 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -4.3 N.D. N.D. -0.7 N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -4.3 N.D. N.D. -0.5 N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -4.0 N.D. N.D. -0.4 N.D.
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -3.2 N.D. N.D. -0.3 N.D.
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -2.7 N.D. N.D. -0.3 N.D.
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.5 N.D. N.D. -2.0 N.D.
survival water survival rep A; Treatment=watercosm; Collection=direct; Time=180_days -2.0 N.D. N.D. +0.1 N.D.
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.1 N.D. N.D. -1.7 N.D.
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.3 N.D. N.D. -1.8 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.2 N.D. N.D. -1.6 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.3 N.D. N.D. -1.7 N.D.
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. -0.9 N.D.
survival water survival rep B; Treatment=watercosm; Collection=direct; Time=180_days -1.2 N.D. N.D. -0.2 N.D.
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.3 N.D. N.D. -0.9 N.D.
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. -0.8 N.D.
carbon source Sucrose (C) -0.9 N.D. N.D. -0.3 N.D.
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 N.D. N.D. -1.0 N.D.
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days -0.8 N.D. N.D. -0.3 N.D.
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.1 N.D. N.D. -0.8 N.D.
stress SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride -0.6 N.D. N.D. -0.3 N.D.
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 N.D. N.D. -0.9 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.1 N.D. N.D. -0.8 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.4 N.D. N.D. -1.1 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.5 N.D. N.D. -1.2 N.D.
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 N.D. N.D. -0.8 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.8 N.D. N.D. -1.3 N.D.
carbon source Sucrose (C) -0.7 N.D. N.D. +0.3 N.D.
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.5 N.D. N.D. -0.8 N.D.
carbon source D-Galactose (C) -0.3 N.D. N.D. +0.9 N.D.
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