Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS04585 and RS_RS04590 are separated by 177 nucleotidesRS_RS04590 and RS_RS04595 are separated by 54 nucleotidesRS_RS04595 and RS_RS04600 are separated by 98 nucleotidesRS_RS04600 and RS_RS04605 are separated by 66 nucleotides RS_RS04585: RS_RS04585 - MetQ/NlpA family ABC transporter substrate-binding protein, at 973,512 to 974,312 _RS04585 RS_RS04590: RS_RS04590 - electron transfer flavoprotein subunit beta/FixA family protein, at 974,490 to 975,239 _RS04590 RS_RS04595: RS_RS04595 - electron transfer flavoprotein subunit alpha, at 975,294 to 976,229 _RS04595 RS_RS04600: RS_RS04600 - acyl-CoA dehydrogenase, at 976,328 to 978,112 _RS04600 RS_RS04605: RS_RS04605 - D-amino acid dehydrogenase small subunit, at 978,179 to 979,468 _RS04605
Group Condition RS_RS04585 RS_RS04590 RS_RS04595 RS_RS04600 RS_RS04605
carbon source L-Alanine (C) -0.4 N.D. N.D. +0.2 -4.7
carbon source L-Alanine (C) +0.3 N.D. N.D. -0.4 -4.4
carbon source D,L-Malic Acid (C) -1.8 N.D. N.D. -1.0 -0.1
carbon source L-Glutamic (C) -2.1 N.D. N.D. -0.5 +0.5
carbon source D-Galactose (C) -1.5 N.D. N.D. -0.7 +0.3
carbon source D-Glucose (C) -1.0 N.D. N.D. -0.8 -0.0
carbon source L-Glutamine (C) -1.3 N.D. N.D. -0.6 +0.7
survival water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days -0.4 N.D. N.D. -0.5 +0.2
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days +0.4 N.D. N.D. -0.8 -0.2
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.7 N.D. N.D. -0.1 +0.3
carbon source L-Aspartic Acid (C) -1.0 N.D. N.D. -0.9 +1.4
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -1.1 N.D. N.D. +0.1 +0.7
in planta Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.4 N.D. N.D. -0.3 +0.5
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. -0.2 +0.4
in planta Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.9 N.D. N.D. -0.1 +1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.4 N.D. N.D. -0.1 +0.8
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi -0.3 N.D. N.D. -0.1 +0.9
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.5 N.D. N.D. +0.2 +1.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.4 N.D. N.D. -0.5 +1.0
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.0 N.D. N.D. +0.1 +0.8
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 N.D. N.D. +0.2 +0.4
in planta Plant=Tomato cv. C42I; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.3 N.D. N.D. +0.4 +0.5
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.4 N.D. N.D. -0.0 +0.8
carbon source L-Aspartic Acid (C) +0.9 N.D. N.D. -0.0 +0.3
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems +0.5 N.D. N.D. -0.5 +1.2
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.4 N.D. N.D. +0.4 +0.5
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.2 N.D. N.D. +0.2 +1.0
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.2 N.D. N.D. -0.1 +1.3
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.7 N.D. N.D. -0.2 +1.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +1.7 N.D. N.D. -0.1 +0.3
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