Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS03590 and RS_RS03595 are separated by 103 nucleotidesRS_RS03595 and RS_RS03600 are separated by 8 nucleotidesRS_RS03600 and RS_RS03605 are separated by 28 nucleotidesRS_RS03605 and RS_RS03610 overlap by 4 nucleotides RS_RS03590: RS_RS03590 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 760,616 to 761,746 _RS03590 RS_RS03595: RS_RS03595 - riboflavin synthase, at 761,850 to 762,503 _RS03595 RS_RS03600: RS_RS03600 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 762,512 to 763,624 _RS03600 RS_RS03605: RS_RS03605 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 763,653 to 764,213 _RS03605 RS_RS03610: RS_RS03610 - type IV pilin protein, at 764,210 to 764,641 _RS03610
Group Condition RS_RS03590 RS_RS03595 RS_RS03600 RS_RS03605 RS_RS03610
carbon source L-Aspartic Acid (C) N.D. N.D. N.D. +0.0 -1.3
carbon source succinate (C) N.D. N.D. N.D. -0.1 -1.1
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -0.1 -0.8
in planta Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -0.5 -0.3
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. -0.3 -0.4
in planta Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. +0.1 -0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Bacitracin N.D. N.D. N.D. -0.0 -0.7
carbon source L-Glutamic (C) N.D. N.D. N.D. -0.0 -0.6
carbon source L-Alanine (C) N.D. N.D. N.D. +0.1 -0.7
carbon source L-Glutamine (C) N.D. N.D. N.D. +0.2 -0.8
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. +0.3 -0.6
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days N.D. N.D. N.D. -0.5 +0.2
in planta Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct N.D. N.D. N.D. +0.4 -0.4
carbon source D-Glucose (C) N.D. N.D. N.D. -0.3 +0.3
cpg no stress control CPG no stress control N.D. N.D. N.D. -0.1 +0.4
carbon source D,L-Malic Acid (C) N.D. N.D. N.D. -0.1 +0.6
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi N.D. N.D. N.D. -0.1 +0.6
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. N.D. N.D. +0.1 +0.5
stress SMSA with Ralstonia_antibiotic_mix N.D. N.D. N.D. +0.0 +0.5
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. N.D. N.D. +0.2 +0.4
carbon source D-Glucose (C) N.D. N.D. N.D. +0.3 +0.4
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted N.D. N.D. N.D. -0.2 +0.9
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems N.D. N.D. N.D. -0.2 +0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_CrystalViolet N.D. N.D. N.D. -0.0 +0.8
stress SMSA with Ralstonia_antibiotic_mix_minus_Penicillin N.D. N.D. N.D. +0.1 +0.7
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol N.D. N.D. N.D. -0.0 +0.8
in planta Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted N.D. N.D. N.D. +0.2 +0.6
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi N.D. N.D. N.D. +0.5 +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin N.D. N.D. N.D. +0.0 +0.9
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol_and_CrystalViolet N.D. N.D. N.D. +0.1 +0.8
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