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Protein
Homologs
Fitness for 5 genes in
Ralstonia solanacearum GMI1000
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RS_RS02680 and RS_RS02685 are separated by 18 nucleotides
RS_RS02685 and RS_RS02690 are separated by 87 nucleotides
RS_RS02690 and RS_RS25320 are separated by 258 nucleotides
RS_RS25320 and RS_RS02695 are separated by 634 nucleotides
RS_RS02680: RS_RS02680 - 3-oxoacyl-ACP reductase, at 576,660 to 578,072
_RS02680
RS_RS02685: RS_RS02685 - acyl-CoA dehydrogenase, at 578,091 to 580,598
_RS02685
RS_RS02690: RS_RS02690 - TetR/AcrR family transcriptional regulator, at 580,686 to 581,708
_RS02690
RS_RS25320: RS_RS25320 - hypothetical protein, at 581,967 to 582,201
_RS25320
RS_RS02695: RS_RS02695 - RNA helicase, at 582,836 to 584,458
_RS02695
Group
Condition
RS
_RS02680
RS
_RS02685
RS
_RS02690
RS
_RS25320
RS
_RS02695
xylem sap
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi
-0.2
+0.0
+0.1
N.D.
-3.2
carbon source
Sucrose (C)
-0.4
-0.1
-0.8
N.D.
-1.0
cpg
CPG
+0.0
-0.1
-0.1
N.D.
-2.0
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
-0.2
+0.1
+0.0
N.D.
-1.9
carbon source
pyruvate (C)
+0.0
+0.2
-0.7
N.D.
-1.3
carbon source
L-Glutamine (C)
+0.2
-0.0
-0.3
N.D.
-1.6
carbon source
L-Alanine (C)
-0.1
-0.0
-0.5
N.D.
-0.9
survival
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days
-0.1
+0.1
+0.1
N.D.
-1.6
carbon source
D-Glucose (C)
+0.1
+0.1
-0.5
N.D.
-1.0
survival
water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=30_days
+0.3
+0.2
-0.1
N.D.
-1.6
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
+0.1
+0.1
-0.1
N.D.
-1.2
carbon source
pyruvate (C)
+0.3
-0.2
-0.5
N.D.
-0.7
stress
SMSA with Ralstonia_antibiotic_mix_minus_Triphenyltetrazoliumchloride
-0.0
-0.1
+0.2
N.D.
-1.2
carbon source
L-Aspartic Acid (C)
+0.2
+0.1
-0.0
N.D.
-1.3
carbon source
D-Galactose (C)
+0.2
+0.1
-0.8
N.D.
-0.5
survival
water survival rep A; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days
+0.0
+0.0
+0.1
N.D.
-1.1
carbon source
D-Glucose (C)
-0.2
-0.0
+0.4
N.D.
-1.0
in planta
Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.0
+0.2
+0.4
N.D.
-1.3
in planta
Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.4
+0.1
+0.9
N.D.
-0.1
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
+0.1
-0.1
+0.3
N.D.
+0.8
in planta
Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
-0.2
-0.0
-0.1
N.D.
+1.5
in planta
Plant=Tomato cv. H7996; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.3
-0.0
-0.1
N.D.
+1.0
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
-0.2
+0.1
+0.5
N.D.
+0.9
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems
-0.3
+0.2
+0.2
N.D.
+1.3
in planta
Plant=Tomato cv. C42L; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
-0.0
+0.2
+0.7
N.D.
+0.6
in planta
Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
-0.1
+0.1
+0.6
N.D.
+1.1
in planta
Plant=Tomato cv. Hawaii7996; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi
-0.1
+0.2
+0.0
N.D.
+1.6
in planta
Plant=Tomato_Hawaii; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.0
+0.1
-0.1
N.D.
+1.8
in planta
Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct
+0.4
+0.4
-0.1
N.D.
+1.2
in planta
Plant=Tomato_C27A; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
+0.1
-0.1
+0.5
N.D.
+1.5
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