Fitness for 5 genes in Ralstonia solanacearum GMI1000

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500 ntRS_RS00255 and RS_RS00260 are separated by 39 nucleotidesRS_RS00260 and RS_RS00265 are separated by 13 nucleotidesRS_RS00265 and RS_RS00270 overlap by 1 nucleotidesRS_RS00270 and RS_RS00275 are separated by 85 nucleotides RS_RS00255: RS_RS00255 - class I SAM-dependent rRNA methyltransferase, at 56,123 to 57,316 _RS00255 RS_RS00260: RS_RS00260 - Tyrosine recombinase XerC 1, at 57,356 to 58,345 _RS00260 RS_RS00265: RS_RS00265 - DUF484 domain-containing protein, at 58,359 to 59,072 _RS00265 RS_RS00270: RS_RS00270 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit B, at 59,072 to 60,538 _RS00270 RS_RS00275: RS_RS00275 - dienelactone hydrolase, at 60,624 to 61,601 _RS00275
Group Condition RS_RS00255 RS_RS00260 RS_RS00265 RS_RS00270 RS_RS00275
carbon source L-Glutamine (C) -0.2 -0.2 N.D. N.D. -4.0
carbon source D,L-Malic Acid (C) -0.2 +0.2 N.D. N.D. -4.0
carbon source Sucrose (C) -0.3 -0.6 N.D. N.D. -1.7
carbon source succinate (C) -0.2 -0.7 N.D. N.D. -1.6
stress SMSA with Ralstonia_antibiotic_mix_minus_Chloramphenicol -0.0 -1.5 N.D. N.D. -0.7
carbon source L-Alanine (C) -0.3 -0.9 N.D. N.D. -0.9
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -0.1 -2.0 N.D. N.D. +0.1
carbon source D-Glucose (C) -0.1 -0.9 N.D. N.D. -0.9
carbon source L-Glutamine (C) -0.2 -1.0 N.D. N.D. -0.6
carbon source L-Glutamic (C) -0.1 +0.4 N.D. N.D. -2.0
carbon source D-Glucose (C) -0.2 -0.5 N.D. N.D. -1.0
carbon source Sucrose (C) -0.3 -1.3 N.D. N.D. -0.1
carbon source pyruvate (C) -0.0 -0.7 N.D. N.D. -1.0
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.2 -0.9 N.D. N.D. -0.5
carbon source L-Aspartic Acid (C) -0.2 -1.1 N.D. N.D. -0.3
xylem sap Plant=Tomato_cv_Moneymaker; PlantTreatment=None; Sample=Xylem_sap; GrowthSubstrate=calcine_clay; Collection=direct; 1dpi -0.2 -0.2 N.D. N.D. -1.1
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin -0.1 -1.3 N.D. N.D. +0.1
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted +0.1 -1.3 N.D. N.D. +0.0
carbon source L-Aspartic Acid (C) +0.2 -0.3 N.D. N.D. -1.0
in planta Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Sap; Sample=Stem; Collection=Plant_fluid_from_centrifuged_stems -0.0 -1.2 N.D. N.D. +0.3
survival water survival rep C; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=1_days -0.2 -1.1 N.D. N.D. +0.4
stress SMSA with Ralstonia_antibiotic_mix_minus_Polymyxin_and_Chloramphenicol -0.2 -1.1 N.D. N.D. +0.5
survival water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=90_days -0.1 -1.0 N.D. N.D. +0.7
in planta Plant=Tomato cv. CU3; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.1 +0.9 N.D. N.D. -1.3
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -0.8 N.D. N.D. +0.8
in planta Plant=Tomato_MoneyMaker; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted -0.0 -0.7 N.D. N.D. +1.0
in planta Plant=Tomato cv. Moneymaker; Treatment=None; Sample=xylem local; Collection=Direct; Time=4 dpi +0.2 -0.8 N.D. N.D. +1.4
in planta Plant=Tomato cv. C66A; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct +0.0 +1.0 N.D. N.D. +0.5
in planta Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted +0.5 +2.0 N.D. N.D. -0.4
in planta Plant=Tomato cv. C21O; PlantTreatment=None; Sample=xylem local total stem; GrowthSubstrate=calcine_clay; Collection=direct -0.1 +1.0 N.D. N.D. +1.8
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