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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37470 and RR42_RS37475 are separated by 54 nucleotides
RR42_RS37475 and RR42_RS37480 are separated by 135 nucleotides
RR42_RS37480 and RR42_RS37485 are separated by 79 nucleotides
RR42_RS37485 and RR42_RS37490 are separated by 1146 nucleotides
RR42_RS37470: RR42_RS37470 - permease, at 3,885,469 to 3,886,239
_RS37470
RR42_RS37475: RR42_RS37475 - peptide chain release factor 3, at 3,886,294 to 3,887,868
_RS37475
RR42_RS37480: RR42_RS37480 - membrane protein, at 3,888,004 to 3,888,969
_RS37480
RR42_RS37485: RR42_RS37485 - membrane protein, at 3,889,049 to 3,889,216
_RS37485
RR42_RS37490: RR42_RS37490 - hypothetical protein, at 3,890,363 to 3,890,683
_RS37490
Group
Condition
RR42
_RS37470
RR42
_RS37475
RR42
_RS37480
RR42
_RS37485
RR42
_RS37490
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.0
-1.6
-0.2
N.D.
N.D.
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.0
-1.4
+0.1
N.D.
N.D.
lb
LB
-0.1
-0.7
-0.4
N.D.
N.D.
stress
R2A with A22 0.01 mg/ml
-0.1
-0.8
-0.2
N.D.
N.D.
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
-0.6
-0.3
N.D.
N.D.
stress
R2A with copper (II) chloride 0.25 mM
-0.1
-0.9
+0.0
N.D.
N.D.
nitrogen source
L-Valine (N)
-0.3
-0.4
-0.2
N.D.
N.D.
stress
R2A with Chloride 300 mM
-0.2
-0.3
-0.3
N.D.
N.D.
carbon source
L-Asparagine (C)
-0.1
-0.3
-0.4
N.D.
N.D.
nitrogen source
D-Alanine (N)
-0.2
-0.4
-0.2
N.D.
N.D.
carbon source
L-Glutamine (C)
-0.1
-0.3
-0.3
N.D.
N.D.
carbon source
L-Tryptophan (C)
-0.1
-0.3
-0.3
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-0.1
-0.2
-0.3
N.D.
N.D.
stress
R2A with nitrate 200 mM
+0.0
-0.4
-0.2
N.D.
N.D.
stress
R2A with Chlorite 4 mM
-0.1
-0.4
-0.1
N.D.
N.D.
carbon source
L-Threonine (C)
+0.0
-0.2
-0.4
N.D.
N.D.
stress
R2A with Chlorite 4 mM
+0.2
-0.4
-0.3
N.D.
N.D.
stress
R2A with Zinc 0.1 mM
-0.2
+0.2
-0.4
N.D.
N.D.
nitrogen source
casaminos (N)
-0.2
-0.3
+0.1
N.D.
N.D.
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
-0.4
-0.1
N.D.
N.D.
carbon source
Protocatechuic Acid (C)
-0.5
+0.3
-0.0
N.D.
N.D.
stress
R2A with sodium fluoride 100 mM
-0.3
+0.2
+0.1
N.D.
N.D.
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
+0.6
-0.4
N.D.
N.D.
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.5
-0.4
N.D.
N.D.
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.3
-0.2
N.D.
N.D.
stress
R2A with Lomefloxacin 0.001 mM
-0.1
+0.5
+0.1
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
+0.4
+0.1
N.D.
N.D.
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.6
-0.0
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.8
+0.2
N.D.
N.D.
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.9
+0.2
N.D.
N.D.
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RR42_RS37480
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