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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37430 and RR42_RS37435 are separated by 1 nucleotides
RR42_RS37435 and RR42_RS37440 are separated by 635 nucleotides
RR42_RS37440 and RR42_RS37445 are separated by 22 nucleotides
RR42_RS37445 and RR42_RS37450 are separated by 252 nucleotides
RR42_RS37430: RR42_RS37430 - glutathione S-transferase, at 3,874,248 to 3,874,952
_RS37430
RR42_RS37435: RR42_RS37435 - elongation factor G, at 3,874,954 to 3,877,005
_RS37435
RR42_RS37440: RR42_RS37440 - phosphogluconate dehydratase, at 3,877,641 to 3,879,467
_RS37440
RR42_RS37445: RR42_RS37445 - hypothetical protein, at 3,879,490 to 3,880,545
_RS37445
RR42_RS37450: RR42_RS37450 - mechanosensitive ion channel protein MscS, at 3,880,798 to 3,881,682
_RS37450
Group
Condition
RR42
_RS37430
RR42
_RS37435
RR42
_RS37440
RR42
_RS37445
RR42
_RS37450
lb
LB
+0.2
-3.9
-0.1
+0.0
-0.4
stress
R2A with nitrate 200 mM
-0.1
-1.2
-0.2
-0.5
-0.4
stress
R2A with copper (II) chloride 0.25 mM
-0.3
-1.3
+0.1
-0.2
-0.2
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-1.6
+0.1
+0.1
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.0
+0.1
-0.0
-0.0
-1.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.2
-1.2
-0.0
-0.1
-0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.8
-0.3
-0.4
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.3
-0.5
-0.2
-0.3
-0.1
nitrogen source
L-Glutamine (N)
-0.6
-0.4
-0.1
-0.2
+0.0
stress
R2A with Sisomicin 0.035 mg/ml
-0.5
-0.3
-0.3
-0.3
+0.0
carbon source
L-Asparagine (C)
-0.1
-0.6
-0.2
-0.3
-0.0
carbon source
Heptanoic (C)
-0.1
-0.1
-0.3
-0.1
-0.7
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
-0.4
-0.1
-0.3
-0.1
stress
R2A with nitrate 200 mM
+0.4
-0.6
-0.1
-0.2
-0.6
carbon source
succinate (C)
+0.1
-0.7
-0.3
-0.1
-0.1
carbon source
Ethanol (C)
-0.1
-0.8
+0.1
-0.1
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.3
-0.7
-0.3
-0.2
-0.1
stress
R2A with Chloride 300 mM
+0.2
-0.5
-0.0
-0.4
-0.2
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.4
-0.4
-0.3
+0.2
carbon source
Hexanoic (C)
-0.3
+0.4
+0.0
-0.2
-0.6
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.1
+0.2
-0.2
-0.4
-0.1
stress
R2A with nitrate 150 mM
-0.2
+0.3
+0.2
-0.3
-0.5
nitrogen source
L-Tryptophan (N)
+0.2
-0.5
+0.2
-0.2
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
+0.4
+0.2
-0.1
-0.4
carbon source
Disodium Glutarate (C)
+0.0
+0.6
+0.1
-0.0
-0.4
carbon source
Protocatechuic Acid (C)
+0.0
+0.7
-0.2
+0.1
-0.3
stress
R2A with Lomefloxacin 0.00075 mM
-0.0
+0.6
-0.2
-0.1
+0.3
stress
R2A with Nickel (II) chloride 0.25 mM
-0.3
+0.5
+0.2
-0.1
+0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.0
+0.8
+0.2
+0.1
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.1
+0.5
+0.5
+0.3
+0.2
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