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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37370 and RR42_RS37375 are separated by 152 nucleotides
RR42_RS37375 and RR42_RS37380 are separated by 251 nucleotides
RR42_RS37380 and RR42_RS37385 are separated by 20 nucleotides
RR42_RS37385 and RR42_RS37390 overlap by 1 nucleotides
RR42_RS37370: RR42_RS37370 - hypothetical protein, at 3,862,900 to 3,863,286
_RS37370
RR42_RS37375: RR42_RS37375 - short-chain dehydrogenase, at 3,863,439 to 3,864,161
_RS37375
RR42_RS37380: RR42_RS37380 - 2-hydroxyacid dehydrogenase, at 3,864,413 to 3,865,348
_RS37380
RR42_RS37385: RR42_RS37385 - membrane protein, at 3,865,369 to 3,866,742
_RS37385
RR42_RS37390: RR42_RS37390 - XRE family transcriptional regulator, at 3,866,742 to 3,867,440
_RS37390
Group
Condition
RR42
_RS37370
RR42
_RS37375
RR42
_RS37380
RR42
_RS37385
RR42
_RS37390
stress
R2A with Zinc 0.1 mM
-0.1
-1.2
-0.7
+0.1
-1.3
nitrogen source
casaminos (N)
-0.3
-1.9
-0.2
-0.2
-0.1
nitrogen source
Glucuronamide (N)
-0.4
-0.6
+0.1
-0.4
-0.8
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.0
-0.5
+0.1
-0.0
-1.4
r2a
R2A
-0.7
-0.8
+0.1
-0.4
-0.1
stress
R2A with Nickel (II) chloride 0.35 mM
-0.4
-0.8
-0.3
-0.1
-0.2
carbon source
Valeric (C)
-0.3
-1.3
+0.1
-0.0
-0.1
carbon source
L-Asparagine (C)
+0.1
-1.0
-0.1
-0.2
-0.4
stress
R2A with Chlorite 4 mM
-0.1
-1.0
-0.1
-0.2
-0.2
carbon source
adipate (C)
+0.1
-1.2
+0.0
-0.3
-0.3
stress
R2A with Chloride 300 mM
+0.2
-0.7
-0.3
-0.5
-0.3
carbon source
L-Phenylalanine (C)
+0.2
-1.1
-0.0
-0.1
-0.2
nitrogen source
L-Leucine (N)
-0.1
-0.7
-0.1
+0.3
-0.7
carbon source
L-Histidine (C)
+0.2
-1.0
+0.1
-0.2
-0.3
carbon source
D-Lactate (C)
-0.2
-0.9
+0.3
-0.3
-0.1
nitrogen source
L-Glutamine (N)
-0.4
+0.2
+0.0
+0.2
-0.9
temperature
R2A 23C
-0.4
+0.8
-0.6
-0.3
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-1.0
+0.4
-0.0
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
-0.7
+0.0
+1.0
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.7
+0.0
-0.1
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.3
+0.5
-0.2
-0.3
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
+0.7
-0.7
-0.3
+0.3
temperature
R2A 23C
-0.4
+1.0
-0.2
-0.3
+0.1
carbon source
Suberic (C)
-0.4
+0.9
+0.1
+0.0
-0.4
carbon source
Octanoic (C)
-0.3
+0.7
+0.3
+0.2
-0.6
carbon source
Dodecandioic (C)
-0.1
+1.2
+0.3
-0.3
-0.5
stress
R2A with Chloride 300 mM
+0.3
+0.7
-0.5
-0.1
+0.1
stress
R2A with nitrate 150 mM
+0.0
+0.9
+0.4
-0.0
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
+0.6
+0.5
+0.4
+0.2
stress
R2A with Nickel (II) chloride 0.5 mM
+0.5
+0.9
+0.4
+0.4
+0.1
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