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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37335 and RR42_RS37340 are separated by 157 nucleotides
RR42_RS37340 and RR42_RS37345 are separated by 95 nucleotides
RR42_RS37345 and RR42_RS37350 overlap by 4 nucleotides
RR42_RS37350 and RR42_RS37355 are separated by 63 nucleotides
RR42_RS37335: RR42_RS37335 - cellulose synthase BcsB subunit, at 3,853,601 to 3,855,910
_RS37335
RR42_RS37340: RR42_RS37340 - cellulose synthase, at 3,856,068 to 3,858,230
_RS37340
RR42_RS37345: RR42_RS37345 - chromosome partitioning protein ParA, at 3,858,326 to 3,859,099
_RS37345
RR42_RS37350: RR42_RS37350 - hypothetical protein, at 3,859,096 to 3,859,773
_RS37350
RR42_RS37355: RR42_RS37355 - cellulose synthase, at 3,859,837 to 3,860,292
_RS37355
Group
Condition
RR42
_RS37335
RR42
_RS37340
RR42
_RS37345
RR42
_RS37350
RR42
_RS37355
nitrogen source
casaminos (N)
-0.5
-0.6
-0.5
-1.1
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
-0.6
-0.5
-0.5
-0.5
-0.6
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.5
-0.4
-0.4
-0.6
-0.6
r2a
R2A
-0.5
-0.5
-0.5
-0.5
-0.5
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
-0.4
-0.4
-0.4
-0.6
nitrogen source
Glucuronamide (N)
-0.4
-0.4
-0.4
-0.8
-0.3
nitrogen source
L-Serine (N)
-0.5
-0.3
-0.3
-0.7
-0.3
nitrogen source
L-Glutamine (N)
-0.3
-0.3
-0.1
-0.2
-1.1
temperature
R2A 23C
-0.4
-0.5
-0.3
-0.4
-0.5
temperature
R2A 23C
-0.3
-0.6
-0.4
-0.5
-0.3
stress
R2A with nitrate 200 mM
-0.4
-0.5
-0.4
-0.6
-0.2
nitrogen source
L-Isoleucine (N)
-0.3
-0.3
-0.1
-0.5
-0.4
nitrogen source
L-Phenylalanine (N)
-0.3
-0.3
-0.2
-0.5
-0.3
stress
R2A with Zinc 0.1 mM
-0.2
-0.2
-0.1
-0.5
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.3
-0.3
-0.3
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
-0.3
-0.3
+0.0
stress
R2A with Lomefloxacin 0.001 mM
-0.1
-0.2
-0.4
-0.5
+0.2
nitrogen source
L-Threonine (N)
+0.2
+0.2
+0.2
+0.2
-0.4
lb
LB
+0.3
+0.0
+0.1
-0.5
+0.7
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+0.4
+0.2
-0.0
+0.5
carbon source
Protocatechuic Acid (C)
+0.2
+0.5
+0.3
+0.3
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
+0.3
+0.3
+0.3
+0.4
carbon source
Hexanoic (C)
+0.4
+0.3
+0.3
+0.4
+0.2
stress
R2A with nitrate 150 mM
+0.4
+0.4
+0.4
+0.3
+0.3
carbon source
Hexanoic (C)
+0.7
+0.7
+0.7
+0.8
+0.3
stress
R2A with Nickel (II) chloride 0.5 mM
+1.0
+0.9
+0.6
+0.6
+0.6
carbon source
Octanoic (C)
+1.4
+1.4
+1.5
+1.5
+0.7
carbon source
Octanoic (C)
+1.5
+1.5
+1.6
+1.6
+1.1
carbon source
Heptanoic (C)
+1.7
+1.7
+1.8
+1.7
+1.2
carbon source
Heptanoic (C)
+1.8
+1.9
+1.8
+2.0
+1.2
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