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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37310 and RR42_RS37315 are separated by 287 nucleotides
RR42_RS37315 and RR42_RS37320 are separated by 19 nucleotides
RR42_RS37320 and RR42_RS37325 are separated by 67 nucleotides
RR42_RS37325 and RR42_RS37330 overlap by 28 nucleotides
RR42_RS37310: RR42_RS37310 - diguanylate cyclase, at 3,842,115 to 3,845,342
_RS37310
RR42_RS37315: RR42_RS37315 - diguanylate cyclase, at 3,845,630 to 3,847,582
_RS37315
RR42_RS37320: RR42_RS37320 - hypothetical protein, at 3,847,602 to 3,847,934
_RS37320
RR42_RS37325: RR42_RS37325 - cellulose synthase, at 3,848,002 to 3,852,405
_RS37325
RR42_RS37330: RR42_RS37330 - 1,4-D-glucanase, at 3,852,378 to 3,853,604
_RS37330
Group
Condition
RR42
_RS37310
RR42
_RS37315
RR42
_RS37320
RR42
_RS37325
RR42
_RS37330
stress
R2A with Dimethyl Sulfoxide 5 vol%
-0.2
-0.3
-1.0
-0.5
-0.7
carbon source
D,L-Lactate (C)
-0.1
-0.1
-2.1
+0.0
-0.4
nitrogen source
casaminos (N)
-0.3
-0.0
-1.4
-0.4
-0.6
carbon source
propionate (C)
-0.2
-0.1
-0.8
-0.0
-1.3
nitrogen source
Glucuronamide (N)
-0.2
-0.3
-0.6
-0.1
-1.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.4
-0.1
+0.2
-1.6
temperature
R2A 23C
-0.3
-0.4
-0.2
-0.3
-0.9
carbon source
4-Hydroxybenzoic Acid (C)
-0.0
-0.3
-1.3
-0.0
-0.2
nitrogen source
L-Glutamine (N)
-0.2
+0.0
-0.8
-0.2
-0.8
carbon source
D-Gluconic Acid (C)
-0.2
-0.0
-0.8
-0.0
-0.7
temperature
R2A 23C
-0.3
-0.2
-0.7
-0.3
-0.3
carbon source
a-Ketoglutaric (C)
-0.2
+0.1
-1.4
-0.0
-0.1
r2a
R2A
-0.1
-0.3
-0.5
-0.4
-0.3
nitrogen source
nitrite (N)
-0.1
+0.2
-0.2
+0.3
-1.8
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
+0.3
-1.3
-0.0
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.4
+0.3
-0.2
-1.1
carbon source
D,L-Lactate (C)
-0.3
-0.1
+0.2
+0.1
-1.2
carbon source
adipate (C)
-0.3
-0.1
+0.3
-0.1
-1.0
carbon source
Carbon source Phenylacetic 2.5 mM
-0.1
+0.0
+0.2
-0.0
-1.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.0
+0.5
-0.0
-1.4
carbon source
Azelaic (C)
-0.2
-0.6
+0.6
-0.0
-0.5
stress
R2A with Cobalt chloride 0.3 mM
+0.1
+0.3
-1.2
+0.4
-0.2
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
+0.2
+0.5
+0.0
-1.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.1
+0.6
+0.3
-0.1
-0.9
carbon source
Hexanoic (C)
-0.4
+0.0
+0.3
+0.8
-1.0
carbon source
Octanoic (C)
-0.4
+0.0
+0.1
+1.5
-1.0
carbon source
Heptanoic (C)
-0.3
-0.1
-0.1
+1.7
-0.2
carbon source
Octanoic (C)
-0.2
+0.0
+0.3
+1.5
-0.5
carbon source
Heptanoic (C)
-0.4
-0.1
-0.2
+2.0
-0.3
stress
R2A with Nickel (II) chloride 0.5 mM
+0.0
+0.6
+0.5
+0.7
-0.5
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RR42_RS37320
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