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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37105 and RR42_RS37110 are separated by 56 nucleotides
RR42_RS37110 and RR42_RS37115 are separated by 345 nucleotides
RR42_RS37115 and RR42_RS37120 are separated by 75 nucleotides
RR42_RS37120 and RR42_RS37125 are separated by 605 nucleotides
RR42_RS37105: RR42_RS37105 - hypothetical protein, at 3,788,836 to 3,789,081
_RS37105
RR42_RS37110: RR42_RS37110 - hypothetical protein, at 3,789,138 to 3,789,575
_RS37110
RR42_RS37115: RR42_RS37115 - hypothetical protein, at 3,789,921 to 3,790,052
_RS37115
RR42_RS37120: RR42_RS37120 - acetyltransferase, at 3,790,128 to 3,790,559
_RS37120
RR42_RS37125: RR42_RS37125 - hypothetical protein, at 3,791,165 to 3,791,443
_RS37125
Group
Condition
RR42
_RS37105
RR42
_RS37110
RR42
_RS37115
RR42
_RS37120
RR42
_RS37125
lb
LB
-0.4
-1.0
-0.3
-0.6
-0.1
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
-1.1
-0.1
-0.4
-0.4
carbon source
L-Malic (C)
+0.1
-0.5
-0.9
+0.0
-0.5
carbon source
Carbon source D,L-Lactate 10 mM
-0.0
+0.3
-1.3
-0.3
-0.4
carbon source
adipate (C)
-0.1
-0.5
-0.3
-0.5
-0.1
nitrogen source
L-Serine (N)
-0.2
-0.2
-1.3
-0.2
+0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
-0.7
-0.1
-0.2
-0.5
carbon source
L-Alanine (C)
-0.4
-0.1
-0.8
+0.2
-0.3
carbon source
Suberic (C)
-0.3
-0.5
-0.4
-0.2
+0.2
carbon source
D,L-Lactate (C)
+0.2
-0.8
-0.8
+0.3
-0.1
stress
R2A with Chloride 300 mM
+0.1
-0.6
-0.6
-0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.3
-1.5
-0.1
+0.0
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
+0.5
+0.2
-0.3
-0.6
nitrogen source
L-Isoleucine (N)
-0.1
-1.5
+0.8
+0.1
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.2
+0.1
-0.9
+0.0
+0.3
carbon source
L-Lactate (C)
+0.0
-0.8
+0.6
+0.0
-0.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.1
+0.5
-1.0
-0.0
+0.1
stress
R2A with Vancomycin 0.5 mg/ml
-0.2
+0.7
-1.0
+0.2
+0.1
stress
R2A with Chlorite 4 mM
+0.1
-0.8
+0.4
+0.2
-0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.3
-1.2
+0.6
+0.2
carbon source
L-Asparagine (C)
+0.1
+0.8
-0.5
+0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.7
+0.5
-0.6
+0.1
carbon source
Protocatechuic Acid (C)
-0.1
+0.4
+0.3
-0.5
+0.5
stress
R2A with Cisplatin 0.001 mg/ml
+0.2
+0.6
+0.0
+0.4
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.1
+1.2
-0.1
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
+0.0
+0.9
+0.4
-0.2
carbon source
succinate (C)
+0.2
+0.6
+0.5
-0.1
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
+1.1
-0.2
-0.0
+0.1
carbon source
L-Asparagine (C)
+0.3
+0.4
+0.1
+0.5
+0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+1.1
+1.1
+0.2
-0.0
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