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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS37085 and RR42_RS37090 are separated by 63 nucleotides
RR42_RS37090 and RR42_RS37095 overlap by 4 nucleotides
RR42_RS37095 and RR42_RS37105 are separated by 841 nucleotides
RR42_RS37105 and RR42_RS37110 are separated by 56 nucleotides
RR42_RS37085: RR42_RS37085 - ATP-dependent DNA ligase, at 3,783,682 to 3,786,183
_RS37085
RR42_RS37090: RR42_RS37090 - DNA repair protein, at 3,786,247 to 3,787,161
_RS37090
RR42_RS37095: RR42_RS37095 - hypothetical protein, at 3,787,158 to 3,787,994
_RS37095
RR42_RS37105: RR42_RS37105 - hypothetical protein, at 3,788,836 to 3,789,081
_RS37105
RR42_RS37110: RR42_RS37110 - hypothetical protein, at 3,789,138 to 3,789,575
_RS37110
Group
Condition
RR42
_RS37085
RR42
_RS37090
RR42
_RS37095
RR42
_RS37105
RR42
_RS37110
lb
LB
-0.2
-0.5
+0.1
-0.4
-1.0
nitrogen source
L-Isoleucine (N)
+0.1
-0.1
+0.1
-0.1
-1.5
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
-0.0
-0.2
+0.0
-1.1
carbon source
L-Lactate (C)
-0.1
-0.1
-0.2
+0.0
-0.8
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.3
-0.2
-0.1
+0.2
-0.7
carbon source
adipate (C)
-0.0
-0.1
-0.3
-0.1
-0.5
stress
R2A with Chloride 300 mM
-0.3
+0.0
-0.1
+0.1
-0.6
carbon source
L-Alanine (C)
-0.2
+0.2
-0.1
-0.2
-0.5
nitrogen source
L-Isoleucine (N)
-0.2
+0.1
-0.3
-0.4
-0.2
stress
R2A with Chlorite 4 mM
-0.1
+0.1
-0.0
+0.1
-0.8
carbon source
Pimelic (C)
+0.0
-0.3
+0.2
-0.1
-0.5
carbon source
pyruvate (C)
-0.1
+0.2
-0.1
+0.0
-0.7
carbon source
L-Tryptophan (C)
-0.1
-0.1
-0.4
-0.3
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
+0.0
-0.1
-0.5
-0.1
carbon source
D,L-Lactate (C)
+0.0
+0.1
+0.2
+0.2
-0.8
nitrogen source
L-Threonine (N)
-0.1
+0.2
-0.3
-0.2
+0.3
carbon source
D-Gluconic Acid (C)
-0.0
-0.1
-0.1
-0.3
+0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.0
-0.3
-0.0
-0.1
+0.7
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.1
+0.3
-0.4
+0.5
nitrogen source
L-Tryptophan (N)
+0.1
-0.1
+0.1
-0.1
+0.7
nitrogen source
L-Glutamine (N)
+0.3
-0.0
+0.2
+0.4
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.2
+0.2
-0.2
+0.4
+0.3
carbon source
succinate (C)
+0.1
-0.0
+0.2
+0.2
+0.6
carbon source
L-Asparagine (C)
+0.1
+0.2
+0.0
+0.1
+0.8
stress
R2A with Cisplatin 0.001 mg/ml
-0.0
+0.2
+0.2
+0.2
+0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
-0.1
+0.3
+0.0
+1.1
carbon source
Protocatechuic Acid (C)
+0.3
-0.3
+0.0
+0.2
+1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.2
+0.2
+0.0
+0.8
temperature
R2A 37C
+0.1
+0.2
+0.4
+0.4
+0.3
carbon source
L-Asparagine (C)
+0.3
+0.4
+0.3
+0.3
+0.4
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