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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36685 and RR42_RS36690 overlap by 4 nucleotides
RR42_RS36690 and RR42_RS36695 are separated by 84 nucleotides
RR42_RS36695 and RR42_RS36700 are separated by 13 nucleotides
RR42_RS36700 and RR42_RS36705 are separated by 49 nucleotides
RR42_RS36685: RR42_RS36685 - MarR family transcriptional regulator, at 3,686,713 to 3,687,228
_RS36685
RR42_RS36690: RR42_RS36690 - DNA alkylation repair protein, at 3,687,225 to 3,688,010
_RS36690
RR42_RS36695: RR42_RS36695 - heavy metal resistance protein CzcA, at 3,688,095 to 3,691,223
_RS36695
RR42_RS36700: RR42_RS36700 - multidrug transporter, at 3,691,237 to 3,692,448
_RS36700
RR42_RS36705: RR42_RS36705 - multidrug transporter, at 3,692,498 to 3,693,838
_RS36705
Group
Condition
RR42
_RS36685
RR42
_RS36690
RR42
_RS36695
RR42
_RS36700
RR42
_RS36705
carbon source
adipate (C)
+0.3
-0.3
-3.7
-4.5
-2.9
carbon source
Pimelic (C)
+0.1
-0.9
-3.8
-3.9
-1.4
carbon source
adipate (C)
+0.4
-1.0
-2.8
-2.7
-2.0
carbon source
Pimelic (C)
+0.3
-0.2
-3.3
-2.5
-1.6
stress
R2A with Cobalt chloride 0.5 mM
+0.1
-0.0
-1.3
-3.4
-2.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.1
-2.1
-1.9
-1.3
carbon source
Disodium Glutarate (C)
+0.4
-0.6
-1.0
-1.3
-0.7
carbon source
Suberic (C)
-0.3
-0.6
-0.5
-0.7
-0.9
carbon source
Protocatechuic Acid (C)
-0.2
-0.9
-0.4
-0.6
-0.6
carbon source
Suberic (C)
-0.0
-0.2
-0.6
-1.3
-0.6
carbon source
a-Ketoglutaric (C)
-0.2
-0.4
-0.5
-1.1
-0.3
carbon source
Disodium Glutarate (C)
+0.3
+0.1
-0.6
-1.5
-0.8
carbon source
a-Ketoglutaric (C)
-0.2
-0.1
-0.5
-1.0
-0.5
nitrogen source
D-Alanine (N)
-0.2
-0.3
-0.8
-0.6
-0.4
nitrogen source
nitrite (N)
-0.2
-0.3
-0.6
-0.5
-0.6
carbon source
Protocatechuic Acid (C)
-0.1
-0.6
-0.2
-0.6
-0.6
carbon source
Octanoic (C)
-0.2
-0.9
-0.2
-0.8
-0.0
carbon source
succinate (C)
+0.1
-0.6
-0.2
-0.8
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.6
+0.4
-0.4
-0.6
-0.5
stress
R2A with Nickel (II) chloride 0.5 mM
+0.3
-0.2
-0.6
-0.7
-0.4
nitrogen source
Glycine (N)
+0.3
+0.0
-0.6
-1.0
-0.3
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.4
+0.6
-1.0
-0.2
-0.3
lb
LB
+0.5
-1.2
-0.3
+0.2
-0.4
nitrogen source
L-Glutamine (N)
-0.9
-0.8
+0.0
+0.4
+0.2
nitrogen source
L-Leucine (N)
-0.5
-0.8
+0.3
+0.3
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
-0.3
+0.5
+0.5
+0.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
+0.7
+0.2
+0.2
+0.3
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.3
+0.6
+0.6
+1.0
stress
R2A with Lomefloxacin 0.00075 mM
-0.2
+0.3
+0.4
+0.5
+1.1
stress
R2A with Lomefloxacin 0.001 mM
-0.3
+0.2
+0.2
+1.0
+1.3
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