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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36670 and RR42_RS36675 are separated by 135 nucleotides
RR42_RS36675 and RR42_RS36680 overlap by 4 nucleotides
RR42_RS36680 and RR42_RS36685 are separated by 27 nucleotides
RR42_RS36685 and RR42_RS36690 overlap by 4 nucleotides
RR42_RS36670: RR42_RS36670 - sodium:sulfate symporter, at 3,683,195 to 3,684,676
_RS36670
RR42_RS36675: RR42_RS36675 - AraC family transcriptional regulator, at 3,684,812 to 3,685,612
_RS36675
RR42_RS36680: RR42_RS36680 - hypothetical protein, at 3,685,609 to 3,686,685
_RS36680
RR42_RS36685: RR42_RS36685 - MarR family transcriptional regulator, at 3,686,713 to 3,687,228
_RS36685
RR42_RS36690: RR42_RS36690 - DNA alkylation repair protein, at 3,687,225 to 3,688,010
_RS36690
Group
Condition
RR42
_RS36670
RR42
_RS36675
RR42
_RS36680
RR42
_RS36685
RR42
_RS36690
carbon source
Protocatechuic Acid (C)
-0.2
-0.7
-0.4
-0.2
-0.9
carbon source
Hexanoic (C)
-0.0
-0.8
-0.3
-0.3
-0.7
nitrogen source
L-Glutamine (N)
-0.1
-0.3
-0.1
-0.9
-0.8
carbon source
Suberic (C)
-0.0
-0.2
-0.8
-0.3
-0.6
carbon source
propionate (C)
-0.1
-0.2
-0.3
-0.1
-0.7
carbon source
Dodecandioic (C)
+0.1
-0.7
-0.5
+0.2
-0.4
carbon source
Octanoic (C)
+0.0
-0.4
+0.1
-0.2
-0.9
carbon source
Dodecandioic (C)
-0.1
-0.2
-0.3
-0.0
-0.6
carbon source
Protocatechuic Acid (C)
-0.1
+0.1
-0.6
-0.1
-0.6
stress
R2A with Vancomycin 0.5 mg/ml
-0.4
-0.4
+0.2
-0.4
-0.3
nitrogen source
L-Leucine (N)
+0.0
+0.1
-0.1
-0.5
-0.8
carbon source
adipate (C)
-0.1
-0.1
-0.3
+0.4
-1.0
carbon source
D,L-Lactate (C)
+0.2
-0.5
-0.2
+0.1
-0.7
lb
LB
+0.1
-0.1
-0.4
+0.5
-1.2
carbon source
Pimelic (C)
+0.0
+0.0
-0.2
+0.1
-0.9
carbon source
succinate (C)
-0.0
-0.5
+0.0
+0.1
-0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.1
-0.2
+0.2
-0.1
-0.7
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.4
-0.1
-0.6
+0.4
carbon source
adipate (C)
-0.2
-0.4
-0.1
+0.3
-0.3
carbon source
Disodium Glutarate (C)
+0.2
-0.3
-0.4
+0.4
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.3
+0.1
-0.6
-0.3
carbon source
Heptanoic (C)
+0.1
-0.2
-0.1
+0.6
-0.7
stress
R2A with Vancomycin 0.5 mg/ml
-0.1
+0.0
-0.1
-0.7
+0.7
stress
R2A with Nickel (II) chloride 0.5 mM
+0.2
+0.3
-0.4
+0.3
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
+0.3
-0.3
-0.4
+0.6
carbon source
a-Ketoglutaric (C)
+0.2
+0.2
+0.4
-0.2
-0.4
carbon source
D,L-Lactate (C)
+0.1
+0.3
+0.4
-0.2
-0.4
carbon source
pyruvate (C)
+0.1
+0.3
+0.2
+0.2
-0.6
stress
R2A with Chloride 300 mM
+0.1
+0.1
+0.5
-0.5
+0.1
r2a
R2A
-0.1
+0.2
-0.2
+0.3
+0.5
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