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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36630 and RR42_RS36635 are separated by 125 nucleotides
RR42_RS36635 and RR42_RS36640 are separated by 80 nucleotides
RR42_RS36640 and RR42_RS36645 are separated by 279 nucleotides
RR42_RS36645 and RR42_RS36650 are separated by 25 nucleotides
RR42_RS36630: RR42_RS36630 - ABC transporter substrate-binding protein, at 3,672,127 to 3,673,089
_RS36630
RR42_RS36635: RR42_RS36635 - long-chain fatty acid--CoA ligase, at 3,673,215 to 3,674,759
_RS36635
RR42_RS36640: RR42_RS36640 - ABC transporter substrate-binding protein, at 3,674,840 to 3,675,820
_RS36640
RR42_RS36645: RR42_RS36645 - acyl-CoA dehydrogenase, at 3,676,100 to 3,677,308
_RS36645
RR42_RS36650: RR42_RS36650 - acyl-CoA dehydrogenase, at 3,677,334 to 3,678,461
_RS36650
Group
Condition
RR42
_RS36630
RR42
_RS36635
RR42
_RS36640
RR42
_RS36645
RR42
_RS36650
stress
R2A with Vancomycin 0.5 mg/ml
-0.5
+0.2
-0.4
+0.0
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
-0.4
+0.2
-0.3
+0.0
lb
LB
-0.3
-0.2
-0.7
+0.5
+0.0
temperature
R2A 23C
-0.3
+0.1
-0.2
+0.1
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.3
+0.1
-0.3
+0.2
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.0
+0.2
+0.1
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.1
-0.2
+0.3
+0.0
-0.7
carbon source
Protocatechuic Acid (C)
+0.2
+0.2
+0.1
-0.2
-0.7
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.0
-0.2
-0.4
+0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.3
-0.3
-0.3
+0.0
+0.5
stress
R2A with Lomefloxacin 0.00075 mM
-0.3
-0.2
+0.2
+0.1
+0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.1
-0.5
+0.1
+0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
-0.2
-0.2
+0.0
+0.5
carbon source
L-Phenylalanine (C)
+0.3
-0.3
+0.2
+0.1
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
+0.3
+0.1
+0.4
+0.1
-0.4
nitrogen source
L-Valine (N)
+0.6
+0.3
-0.2
-0.3
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.4
+0.1
+0.4
+0.1
-0.4
carbon source
Protocatechuic Acid (C)
+0.7
+0.4
-0.3
-0.3
+0.2
carbon source
propionate (C)
+0.3
+0.4
+0.1
-0.3
+0.1
carbon source
L-Glutamine (C)
+0.4
-0.3
+0.2
+0.0
+0.2
carbon source
Azelaic (C)
+0.3
+0.4
+0.3
-0.2
+0.0
carbon source
Octanoic (C)
+0.3
+0.5
-0.1
-0.0
+0.1
stress
R2A with Cobalt chloride 0.3 mM
+0.4
+0.2
-0.1
+0.0
+0.4
carbon source
Hexanoic (C)
+0.4
+0.1
-0.1
+0.3
+0.4
carbon source
D,L-Lactate (C)
+0.2
+0.2
+0.2
+0.1
+0.4
nitrogen source
L-Phenylalanine (N)
+0.6
+0.4
+0.2
-0.1
+0.1
stress
R2A with nitrate 200 mM
+0.3
+0.2
+0.4
+0.2
+0.0
stress
R2A with Chlorite 4 mM
+0.3
+0.2
+0.4
+0.0
+0.4
carbon source
adipate (C)
+0.6
+1.4
+1.2
+1.0
+0.0
carbon source
adipate (C)
+0.0
+1.6
+1.4
+1.1
+0.4
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RR42_RS36640
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