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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36615 and RR42_RS36620 are separated by 85 nucleotides
RR42_RS36620 and RR42_RS36625 are separated by 169 nucleotides
RR42_RS36625 and RR42_RS36630 are separated by 51 nucleotides
RR42_RS36630 and RR42_RS36635 are separated by 125 nucleotides
RR42_RS36615: RR42_RS36615 - acyl-CoA dehydrogenase, at 3,669,539 to 3,670,393
_RS36615
RR42_RS36620: RR42_RS36620 - hypothetical protein, at 3,670,479 to 3,671,453
_RS36620
RR42_RS36625: RR42_RS36625 - dehydratase, at 3,671,623 to 3,672,075
_RS36625
RR42_RS36630: RR42_RS36630 - ABC transporter substrate-binding protein, at 3,672,127 to 3,673,089
_RS36630
RR42_RS36635: RR42_RS36635 - long-chain fatty acid--CoA ligase, at 3,673,215 to 3,674,759
_RS36635
Group
Condition
RR42
_RS36615
RR42
_RS36620
RR42
_RS36625
RR42
_RS36630
RR42
_RS36635
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.1
-0.0
-0.3
-0.4
stress
R2A with Cobalt chloride 0.5 mM
-0.7
-0.3
-0.4
+0.4
+0.1
stress
R2A with Lomefloxacin 0.00075 mM
+0.3
-0.1
-0.3
-0.3
-0.2
carbon source
L-Glutamine (C)
-0.3
-0.0
-0.4
+0.4
-0.3
stress
R2A with copper (II) chloride 0.25 mM
+0.4
-0.3
-0.3
-0.0
-0.3
stress
R2A with Vancomycin 0.5 mg/ml
+0.1
+0.2
-0.3
-0.5
+0.2
lb
LB
-0.9
+0.7
+0.4
-0.3
-0.2
carbon source
pyruvate (C)
+0.1
-0.2
-0.5
+0.2
+0.1
stress
R2A with nitrate 150 mM
-0.3
+0.4
-0.2
-0.2
+0.2
stress
R2A with Zinc 0.1 mM
-0.4
+0.1
-0.3
+0.4
+0.1
carbon source
Octanoic (C)
-0.7
-0.1
-0.0
+0.1
+0.5
nitrogen source
L-Valine (N)
-0.1
-0.4
-0.3
+0.6
+0.3
carbon source
L-Alanine (C)
-0.3
+0.4
+0.4
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
+0.7
+0.1
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.7
+0.1
-0.6
+0.2
-0.0
stress
R2A with Chloride 300 mM
+0.5
-0.3
-0.2
+0.2
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.6
-0.1
-0.4
+0.0
+0.3
carbon source
propionate (C)
-0.3
-0.1
+0.0
+0.3
+0.4
carbon source
Protocatechuic Acid (C)
-0.5
+0.0
-0.1
+0.7
+0.4
nitrogen source
L-Leucine (N)
+0.1
-0.3
+0.3
-0.0
+0.4
nitrogen source
L-Phenylalanine (N)
-0.3
+0.2
-0.2
+0.6
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.3
+0.1
+0.3
+0.3
-0.2
carbon source
Azelaic (C)
-0.2
+0.3
+0.1
+0.3
+0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
-0.0
+0.3
+0.3
-0.3
carbon source
Pimelic (C)
+0.3
+0.2
-0.1
+0.5
+0.2
carbon source
Valeric (C)
-0.0
+0.1
+0.4
+0.5
+0.2
carbon source
Hexanoic (C)
+0.3
+0.3
+0.1
+0.4
+0.1
carbon source
Octanoic (C)
+0.6
-0.1
-0.0
+0.3
+0.5
carbon source
adipate (C)
-0.2
+0.5
-0.5
+0.6
+1.4
carbon source
adipate (C)
+0.1
-0.0
+0.1
+0.0
+1.6
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