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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36475 and RR42_RS36480 are separated by 91 nucleotides
RR42_RS36480 and RR42_RS36485 are separated by 37 nucleotides
RR42_RS36485 and RR42_RS36490 are separated by 432 nucleotides
RR42_RS36490 and RR42_RS36495 are separated by 91 nucleotides
RR42_RS36475: RR42_RS36475 - SpoVR family protein, at 3,637,935 to 3,639,461
_RS36475
RR42_RS36480: RR42_RS36480 - hypothetical protein, at 3,639,553 to 3,640,830
_RS36480
RR42_RS36485: RR42_RS36485 - serine/threonine protein kinase, at 3,640,868 to 3,642,790
_RS36485
RR42_RS36490: RR42_RS36490 - acyl-CoA dehydrogenase, at 3,643,223 to 3,644,410
_RS36490
RR42_RS36495: RR42_RS36495 - enoyl-CoA hydratase, at 3,644,502 to 3,645,281
_RS36495
Group
Condition
RR42
_RS36475
RR42
_RS36480
RR42
_RS36485
RR42
_RS36490
RR42
_RS36495
carbon source
D-Gluconic Acid (C)
-1.1
-0.9
-1.1
-0.1
+0.5
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.5
-0.3
-0.2
-0.6
-0.4
carbon source
succinate (C)
-0.2
-0.4
-0.3
-0.6
-0.0
carbon source
Suberic (C)
+0.1
-0.2
-0.1
-0.5
-0.8
carbon source
Pimelic (C)
-0.1
-0.1
-0.1
-0.5
-0.6
carbon source
D,L-Lactate (C)
-0.2
-0.1
-0.0
-0.3
-0.7
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.1
+0.3
+0.2
-0.2
-1.6
carbon source
propionate (C)
-0.1
-0.1
+0.1
-0.4
-0.8
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
-0.1
-0.1
+0.2
+0.0
-1.2
carbon source
Heptanoic (C)
-0.2
-0.2
+0.0
-0.0
-0.9
carbon source
adipate (C)
-0.2
-0.5
+0.0
-0.2
-0.4
stress
R2A with Nickel (II) chloride 0.25 mM
-0.1
-0.3
+0.0
-0.4
-0.4
carbon source
Valeric (C)
-0.2
-0.3
+0.1
-0.2
-0.5
carbon source
Protocatechuic Acid (C)
-0.3
-0.2
+0.3
-1.3
+0.6
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.3
-0.0
+0.2
-0.1
-0.6
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.0
+0.2
+0.0
-0.2
-0.8
stress
R2A with Lomefloxacin 0.001 mM
+0.1
+0.1
+0.0
+0.2
-1.2
nitrogen source
L-Glutamine (N)
+0.0
+0.0
-0.1
+0.5
-1.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
+0.3
+0.0
-0.2
-0.7
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.3
+0.1
-0.0
-0.7
+0.2
carbon source
Disodium Glutarate (C)
-0.3
-0.3
+0.1
-0.2
+0.5
carbon source
Suberic (C)
-0.2
-0.3
+0.1
-0.4
+0.6
stress
R2A with Lomefloxacin 0.00075 mM
-0.4
+0.0
+0.0
-0.3
+0.6
stress
R2A with sodium fluoride 100 mM
+0.1
+0.0
+0.2
+0.2
-0.6
nitrogen source
Glucuronamide (N)
-0.0
-0.3
-0.3
+0.3
+0.3
carbon source
adipate (C)
-0.4
-0.2
+0.1
+0.1
+0.6
nitrogen source
L-Phenylalanine (N)
+0.2
-0.3
-0.1
+0.2
+0.6
nitrogen source
L-Leucine (N)
+0.1
+0.2
+0.1
+0.6
-0.2
nitrogen source
L-Lysine (N)
+0.3
+0.3
+0.1
+0.2
+0.2
carbon source
L-Tryptophan (C)
+0.2
+0.1
+0.2
+0.5
+0.3
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