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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36435 and RR42_RS36440 are separated by 9 nucleotides
RR42_RS36440 and RR42_RS36445 are separated by 156 nucleotides
RR42_RS36445 and RR42_RS36450 are separated by 69 nucleotides
RR42_RS36450 and RR42_RS36455 are separated by 19 nucleotides
RR42_RS36435: RR42_RS36435 - LuxR family transcriptional regulator, at 3,629,497 to 3,630,657
_RS36435
RR42_RS36440: RR42_RS36440 - LysR family transcriptional regulator, at 3,630,667 to 3,631,557
_RS36440
RR42_RS36445: RR42_RS36445 - acetyl-CoA acetyltransferase, at 3,631,714 to 3,632,922
_RS36445
RR42_RS36450: RR42_RS36450 - acyl dehydratase, at 3,632,992 to 3,633,453
_RS36450
RR42_RS36455: RR42_RS36455 - acyl-CoA dehydrogenase, at 3,633,473 to 3,634,633
_RS36455
Group
Condition
RR42
_RS36435
RR42
_RS36440
RR42
_RS36445
RR42
_RS36450
RR42
_RS36455
lb
LB
-0.1
+0.1
-1.0
-3.2
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.1
-0.1
-1.0
-2.6
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.1
-0.2
-2.6
-0.2
carbon source
D,L-Lactate (C)
+0.1
-0.3
-0.4
-2.0
-0.3
nitrogen source
L-Glutamine (N)
+0.2
-0.1
-0.6
-2.2
-0.0
carbon source
succinate (C)
-0.1
-0.5
-0.2
-1.3
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.7
+0.5
-2.1
+0.0
carbon source
Heptanoic (C)
+0.2
-0.2
-0.4
-1.9
+0.2
r2a
R2A
+0.1
-0.3
-0.3
-1.2
-0.5
carbon source
Valeric (C)
+0.1
-0.4
+0.1
-1.8
+0.0
carbon source
Disodium Glutarate (C)
-0.1
-0.4
-0.4
-0.8
-0.3
carbon source
succinate (C)
+0.3
-0.1
-0.0
-2.1
+0.0
temperature
R2A 23C
-0.1
-0.0
-0.2
-1.8
+0.2
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.1
-0.9
-0.9
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.3
-0.3
-0.0
-1.9
+0.0
stress
R2A with Chloride 300 mM
+0.1
+0.0
+0.0
-1.8
-0.2
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
+0.1
-0.1
-0.5
-1.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.6
-0.4
+0.1
-0.7
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
-0.2
+0.4
-1.1
-0.2
stress
R2A with Chlorite 4 mM
+0.3
+0.3
-0.5
-1.1
+0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.1
+0.0
-1.2
+0.6
-0.0
carbon source
pyruvate (C)
+0.3
+0.3
+0.2
-1.2
-0.1
carbon source
Protocatechuic Acid (C)
+0.2
+0.0
-1.0
+0.6
-0.2
carbon source
L-Glutamine (C)
+0.3
+0.1
+0.4
-1.1
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.1
+0.2
-0.4
+1.0
-0.2
nitrogen source
casaminos (N)
-0.2
-0.2
+0.3
+1.1
-0.4
carbon source
Heptanoic (C)
-0.1
-0.3
-0.3
+1.5
+0.1
carbon source
adipate (C)
+0.1
-0.4
+0.5
+0.8
+0.1
carbon source
Suberic (C)
+0.1
-0.3
-0.6
+1.9
+0.2
nitrogen source
L-Threonine (N)
+0.1
+0.2
+0.5
+1.0
+0.1
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