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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36405 and RR42_RS36410 are separated by 1027 nucleotides
RR42_RS36410 and RR42_RS36415 are separated by 65 nucleotides
RR42_RS36415 and RR42_RS36420 are separated by 329 nucleotides
RR42_RS36420 and RR42_RS36425 are separated by 31 nucleotides
RR42_RS36405: RR42_RS36405 - LuxR family transcriptional regulator, at 3,621,334 to 3,622,044
_RS36405
RR42_RS36410: RR42_RS36410 - acyl-CoA synthetase, at 3,623,072 to 3,624,649
_RS36410
RR42_RS36415: RR42_RS36415 - 3-hydroxy-2-methylbutyryl-CoA dehydrogenase, at 3,624,715 to 3,625,497
_RS36415
RR42_RS36420: RR42_RS36420 - membrane protein, at 3,625,827 to 3,626,072
_RS36420
RR42_RS36425: RR42_RS36425 - hypothetical protein, at 3,626,104 to 3,626,430
_RS36425
Group
Condition
RR42
_RS36405
RR42
_RS36410
RR42
_RS36415
RR42
_RS36420
RR42
_RS36425
nitrogen source
L-Leucine (N)
+0.3
-0.3
-2.4
N.D.
+0.2
carbon source
Octanoic (C)
+0.1
-0.2
-2.0
N.D.
+0.1
lb
LB
-0.3
-0.2
-0.4
N.D.
-0.8
carbon source
Pimelic (C)
-0.0
-0.2
-1.0
N.D.
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.5
-0.9
N.D.
-0.3
carbon source
adipate (C)
-0.4
-0.2
-0.6
N.D.
-0.2
carbon source
propionate (C)
-0.3
-0.4
-0.8
N.D.
+0.1
carbon source
succinate (C)
-0.2
-0.3
-1.2
N.D.
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.1
-0.7
N.D.
-0.3
stress
R2A with Chlorite 4 mM
-0.2
-0.2
-0.9
N.D.
-0.1
carbon source
Disodium Glutarate (C)
+0.0
-0.4
-0.9
N.D.
-0.1
carbon source
Azelaic (C)
+0.1
-0.3
-1.0
N.D.
-0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.0
-0.3
-1.0
N.D.
+0.1
carbon source
succinate (C)
-0.1
-0.2
-1.0
N.D.
+0.1
nitrogen source
L-Citrulline (N)
+0.2
-0.1
-1.2
N.D.
-0.1
stress
R2A with copper (II) chloride 0.25 mM
-0.4
-0.0
-0.9
N.D.
+0.2
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
-0.2
-0.4
N.D.
-0.6
carbon source
Protocatechuic Acid (C)
+0.2
-0.4
-1.0
N.D.
+0.3
temperature
R2A 23C
+0.1
+0.3
-1.0
N.D.
-0.3
stress
R2A with nitrate 200 mM
-0.3
+0.0
-0.8
N.D.
+0.2
carbon source
Suberic (C)
-0.3
-0.3
-0.7
N.D.
+0.5
stress
R2A with Lomefloxacin 0.001 mM
+0.5
-0.3
-0.8
N.D.
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-1.5
-0.0
+1.1
N.D.
-0.2
carbon source
D-Gluconic Acid (C)
+0.5
-0.1
-1.0
N.D.
-0.0
carbon source
Heptanoic (C)
-0.6
-0.2
-0.2
N.D.
+0.5
nitrogen source
L-Leucine (N)
+0.4
+0.0
-0.9
N.D.
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-0.1
-0.3
+1.0
N.D.
-0.5
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.3
+0.3
+0.5
N.D.
-0.4
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.1
+2.6
N.D.
+0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.0
-0.1
+3.7
N.D.
+0.2
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