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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36370 and RR42_RS36375 are separated by 102 nucleotides
RR42_RS36375 and RR42_RS36380 are separated by 128 nucleotides
RR42_RS36380 and RR42_RS36385 are separated by 205 nucleotides
RR42_RS36385 and RR42_RS36390 are separated by 292 nucleotides
RR42_RS36370: RR42_RS36370 - dihydrodipicolinate synthase, at 3,610,927 to 3,611,853
_RS36370
RR42_RS36375: RR42_RS36375 - aspartate:proton symporter, at 3,611,956 to 3,613,530
_RS36375
RR42_RS36380: RR42_RS36380 - LuxR family transcriptional regulator, at 3,613,659 to 3,616,430
_RS36380
RR42_RS36385: RR42_RS36385 - acyl-CoA synthetase, at 3,616,636 to 3,618,180
_RS36385
RR42_RS36390: RR42_RS36390 - acyl-CoA dehydrogenase, at 3,618,473 to 3,619,618
_RS36390
Group
Condition
RR42
_RS36370
RR42
_RS36375
RR42
_RS36380
RR42
_RS36385
RR42
_RS36390
stress
R2A with Cobalt chloride 0.5 mM
-0.9
-0.1
+0.1
-0.3
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
-0.1
-0.8
+0.1
-0.4
carbon source
L-Asparagine (C)
-0.1
+0.1
-0.7
-0.2
-0.2
stress
R2A with Vancomycin 0.5 mg/ml
-0.7
+0.1
-0.0
-0.1
-0.2
carbon source
Disodium Glutarate (C)
+0.1
+0.0
-0.5
-0.1
-0.4
carbon source
Pimelic (C)
-0.4
-0.1
-0.0
-0.3
-0.2
carbon source
pyruvate (C)
-0.8
+0.1
-0.2
+0.1
-0.2
stress
R2A with Bacitracin 0.5 mg/ml
-0.1
+0.1
-0.4
-0.4
-0.1
carbon source
propionate (C)
-0.3
+0.1
-0.3
-0.2
-0.2
carbon source
L-Histidine (C)
+0.2
+0.0
-0.3
-0.4
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
+0.2
-0.3
-0.3
+0.1
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.4
+0.2
-0.3
+0.1
-0.1
carbon source
D-Lactate (C)
+0.2
+0.1
-0.5
-0.0
-0.2
carbon source
Suberic (C)
-0.4
+0.0
+0.4
+0.1
-0.3
carbon source
adipate (C)
+0.2
-0.1
+0.2
-0.2
-0.4
carbon source
succinate (C)
-0.4
+0.1
+0.3
+0.1
-0.3
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.0
+0.2
-0.8
+0.2
+0.2
nitrogen source
L-Isoleucine (N)
-0.6
+0.3
+0.1
+0.1
-0.1
carbon source
Valeric (C)
-0.1
+0.1
+0.4
-0.1
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.6
+0.2
-0.5
-0.0
-0.1
carbon source
Octanoic (C)
+0.1
-0.0
+0.5
+0.1
-0.5
carbon source
Suberic (C)
+0.3
-0.0
+0.4
-0.2
-0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
-0.2
+0.2
+0.5
-0.2
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.0
+0.2
-0.4
+0.1
+0.3
carbon source
L-Glutamine (C)
+0.7
+0.0
-0.3
+0.1
-0.2
carbon source
Protocatechuic Acid (C)
+0.8
-0.3
+0.2
+0.0
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.4
+0.3
-0.2
+0.0
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
+0.1
+0.4
-0.0
-0.4
stress
R2A with Lomefloxacin 0.00075 mM
+0.4
-0.0
+0.5
-0.0
+0.1
stress
R2A with Dimethyl Sulfoxide 5 vol%
+0.4
+0.1
+0.3
+0.0
+0.4
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