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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36325 and RR42_RS36330 are separated by 12 nucleotides
RR42_RS36330 and RR42_RS36335 are separated by 185 nucleotides
RR42_RS36335 and RR42_RS36340 are separated by 17 nucleotides
RR42_RS36340 and RR42_RS36345 are separated by 208 nucleotides
RR42_RS36325: RR42_RS36325 - esterase, at 3,602,610 to 3,603,074
_RS36325
RR42_RS36330: RR42_RS36330 - nitronate monooxygenase, at 3,603,087 to 3,604,061
_RS36330
RR42_RS36335: RR42_RS36335 - enoyl-CoA hydratase, at 3,604,247 to 3,605,134
_RS36335
RR42_RS36340: RR42_RS36340 - NADH dehydrogenase, at 3,605,152 to 3,605,823
_RS36340
RR42_RS36345: RR42_RS36345 - hydroxyproline-2-epimerase, at 3,606,032 to 3,607,000
_RS36345
Group
Condition
RR42
_RS36325
RR42
_RS36330
RR42
_RS36335
RR42
_RS36340
RR42
_RS36345
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-1.5
-1.7
-0.5
-0.1
lb
LB
-0.2
-0.3
-1.7
-0.7
+0.5
carbon source
Protocatechuic Acid (C)
-0.9
+0.2
-0.9
-0.8
+0.2
nitrogen source
L-Threonine (N)
-0.3
-0.1
-0.9
-0.2
-0.5
carbon source
L-Alanine (C)
-0.3
-0.8
-0.6
+0.2
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.5
-0.6
+0.2
-0.4
-0.5
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.9
-0.2
+0.3
-0.0
-0.8
nitrogen source
Glycine (N)
+0.3
-0.2
-0.9
-0.2
-0.4
carbon source
Protocatechuic Acid (C)
-0.7
+0.6
-0.5
-0.6
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.9
+0.5
-0.8
-0.1
-0.0
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
-0.4
-1.1
-0.1
+0.1
stress
R2A with Cobalt chloride 0.5 mM
-1.0
+0.3
-0.4
-0.0
+0.3
nitrogen source
L-Glutamine (N)
+0.6
-0.8
-0.6
+0.0
+0.0
nitrogen source
L-Valine (N)
+0.6
-0.5
-0.6
+0.1
-0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.8
-0.5
+0.4
+0.1
+0.3
nitrogen source
casaminos (N)
+0.4
+0.2
-1.3
+0.4
-0.2
carbon source
Suberic (C)
-1.2
+0.3
+0.7
+0.1
+0.0
carbon source
succinate (C)
-1.1
+0.5
+0.4
+0.1
+0.1
carbon source
Octanoic (C)
-1.0
+0.9
-0.0
+0.2
+0.4
carbon source
propionate (C)
-0.9
+0.4
+0.5
+0.3
+0.0
carbon source
adipate (C)
-1.0
+0.4
+1.0
+0.1
-0.1
carbon source
Disodium Glutarate (C)
-0.5
+0.6
+0.7
-0.3
-0.0
carbon source
Heptanoic (C)
-0.8
+0.3
+0.5
+0.0
+0.5
r2a
R2A
-0.6
+0.6
+0.5
-0.1
+0.1
temperature
R2A 23C
-1.1
+0.0
+1.1
+0.3
+0.3
carbon source
succinate (C)
-0.8
+0.2
+0.7
+0.2
+0.3
carbon source
Heptanoic (C)
-0.6
+0.5
+0.6
-0.1
+0.2
carbon source
Dodecandioic (C)
-0.8
+0.2
+0.8
+0.3
+0.2
carbon source
Octanoic (C)
-0.3
+0.5
+0.6
-0.2
+0.4
carbon source
Dodecandioic (C)
-0.5
+0.4
+0.7
+0.2
+0.5
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