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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36225 and RR42_RS36230 are separated by 217 nucleotides
RR42_RS36230 and RR42_RS36235 are separated by 44 nucleotides
RR42_RS36235 and RR42_RS36240 overlap by 4 nucleotides
RR42_RS36240 and RR42_RS36245 are separated by 6 nucleotides
RR42_RS36225: RR42_RS36225 - (2Fe-2S)-binding protein, at 3,576,726 to 3,577,763
_RS36225
RR42_RS36230: RR42_RS36230 - nitrate ABC transporter ATPase, at 3,577,981 to 3,578,724
_RS36230
RR42_RS36235: RR42_RS36235 - ABC transporter ATP-binding protein, at 3,578,769 to 3,579,563
_RS36235
RR42_RS36240: RR42_RS36240 - amidohydrolase, at 3,579,560 to 3,581,029
_RS36240
RR42_RS36245: RR42_RS36245 - excisionase, at 3,581,036 to 3,582,214
_RS36245
Group
Condition
RR42
_RS36225
RR42
_RS36230
RR42
_RS36235
RR42
_RS36240
RR42
_RS36245
carbon source
adipate (C)
-0.1
-0.3
-0.8
-0.2
-0.6
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.2
-0.4
+0.1
-0.4
stress
R2A with Cephalothin 0.25 mg/ml
+0.1
-0.2
-0.5
-0.0
-0.4
carbon source
Carbon source D,L-Lactate 10 mM
+0.3
-0.4
-0.3
-0.0
-0.6
carbon source
Carbon source Phenylacetic 2.5 mM
+0.1
-0.5
+0.1
+0.1
-0.8
nitrogen source
D-Alanine (N)
+0.1
-0.1
-0.3
+0.2
-0.9
r2a
R2A
+0.2
-0.1
-0.4
-0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
-0.2
-0.0
+0.7
-0.9
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.4
-0.1
-0.4
-0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
+0.2
-0.0
+0.4
-0.8
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
+0.0
+0.1
+0.4
-0.9
carbon source
L-Asparagine (C)
-0.2
-0.4
-0.2
-0.0
+0.6
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
-0.3
+0.3
-0.4
+0.3
-0.1
stress
R2A with Vancomycin 0.5 mg/ml
+0.2
+0.3
-0.0
+0.2
-0.6
lb
LB
-0.0
+0.1
+0.5
-0.7
+0.2
carbon source
D,L-Lactate (C)
+0.1
-0.1
-0.4
+0.2
+0.4
nitrogen source
L-Tryptophan (N)
+0.3
-0.1
-0.5
+0.3
+0.3
carbon source
succinate (C)
+0.2
+0.1
-0.5
+0.0
+0.5
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
+0.3
-0.1
+0.2
-0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.3
+0.0
+0.4
+0.2
-0.5
carbon source
a-Ketoglutaric (C)
+0.0
-0.2
-0.1
-0.1
+0.9
nitrogen source
L-Asparagine (N)
-0.0
-0.5
+0.1
-0.1
+1.0
carbon source
propionate (C)
-0.0
-0.3
+0.3
-0.1
+0.6
carbon source
Hexanoic (C)
+0.1
-0.1
-0.1
-0.2
+0.8
carbon source
Azelaic (C)
+0.4
-0.1
-0.6
+0.0
+0.8
carbon source
L-Asparagine (C)
+0.2
+0.1
+0.3
-0.4
+0.3
carbon source
L-Leucine (C)
-0.3
-0.2
+0.2
+0.3
+0.6
carbon source
L-Malic (C)
+0.2
-0.5
+0.1
+0.2
+0.8
carbon source
Octanoic (C)
+0.2
-0.2
-0.2
+0.5
+0.8
carbon source
succinate (C)
+0.0
+0.2
+0.2
+0.2
+0.7
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