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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36210 and RR42_RS36215 are separated by 82 nucleotides
RR42_RS36215 and RR42_RS36220 are separated by 468 nucleotides
RR42_RS36220 and RR42_RS36225 are separated by 49 nucleotides
RR42_RS36225 and RR42_RS36230 are separated by 217 nucleotides
RR42_RS36210: RR42_RS36210 - MFS transporter, at 3,573,364 to 3,574,704
_RS36210
RR42_RS36215: RR42_RS36215 - hypothetical protein, at 3,574,787 to 3,575,212
_RS36215
RR42_RS36220: RR42_RS36220 - nitrate ABC transporter substrate-binding protein, at 3,575,681 to 3,576,676
_RS36220
RR42_RS36225: RR42_RS36225 - (2Fe-2S)-binding protein, at 3,576,726 to 3,577,763
_RS36225
RR42_RS36230: RR42_RS36230 - nitrate ABC transporter ATPase, at 3,577,981 to 3,578,724
_RS36230
Group
Condition
RR42
_RS36210
RR42
_RS36215
RR42
_RS36220
RR42
_RS36225
RR42
_RS36230
carbon source
L-Histidine (C)
-0.2
N.D.
-0.2
-0.2
-0.5
carbon source
L-Asparagine (C)
-0.2
N.D.
-0.1
-0.2
-0.4
nitrogen source
L-Lysine (N)
-0.1
N.D.
-0.1
-0.2
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.1
N.D.
-0.2
-0.4
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
N.D.
-0.0
-0.4
-0.1
carbon source
4-Hydroxybenzoic Acid (C)
-0.1
N.D.
+0.2
-0.2
-0.3
carbon source
L-Alanine (C)
+0.1
N.D.
+0.1
-0.3
-0.2
carbon source
L-Tryptophan (C)
-0.0
N.D.
+0.1
-0.1
-0.3
carbon source
L-Malic (C)
-0.0
N.D.
+0.0
+0.2
-0.5
carbon source
adipate (C)
+0.3
N.D.
-0.1
-0.1
-0.3
r2a
R2A
+0.0
N.D.
-0.3
+0.2
-0.1
carbon source
L-Leucine (C)
-0.1
N.D.
+0.2
+0.0
-0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.2
N.D.
-0.3
-0.2
+0.2
carbon source
Protocatechuic Acid (C)
+0.4
N.D.
-0.2
+0.0
-0.3
carbon source
Carbon source D,L-Lactate 10 mM
+0.1
N.D.
-0.0
+0.3
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.0
N.D.
+0.3
-0.1
-0.3
carbon source
Carbon source Phenylacetic 2.5 mM
+0.2
N.D.
+0.2
+0.1
-0.5
carbon source
L-Asparagine (C)
-0.1
N.D.
-0.2
+0.2
+0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.0
N.D.
+0.0
-0.3
+0.3
carbon source
Pimelic (C)
+0.1
N.D.
-0.0
+0.2
-0.2
nitrogen source
L-Citrulline (N)
+0.1
N.D.
+0.0
-0.2
+0.3
carbon source
Dodecandioic (C)
+0.1
N.D.
-0.1
+0.3
+0.1
carbon source
Suberic (C)
+0.2
N.D.
-0.2
+0.4
+0.0
stress
R2A with nitrate 200 mM
-0.0
N.D.
+0.2
-0.1
+0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.0
N.D.
+0.0
+0.2
+0.3
stress
R2A with Cisplatin 0.001 mg/ml
-0.1
N.D.
+0.1
+0.3
+0.3
carbon source
Azelaic (C)
+0.3
N.D.
+0.2
+0.2
+0.0
carbon source
Azelaic (C)
+0.3
N.D.
+0.2
+0.4
-0.1
carbon source
Valeric (C)
+0.2
N.D.
+0.0
+0.3
+0.2
stress
R2A with Nickel (II) chloride 0.25 mM
-0.0
N.D.
+0.2
+0.3
+0.3
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