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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36120 and RR42_RS36125 are separated by 141 nucleotides
RR42_RS36125 and RR42_RS36130 are separated by 13 nucleotides
RR42_RS36130 and RR42_RS36135 are separated by 212 nucleotides
RR42_RS36135 and RR42_RS36140 are separated by 6 nucleotides
RR42_RS36120: RR42_RS36120 - LysR family transcriptional regulator, at 3,552,074 to 3,553,003
_RS36120
RR42_RS36125: RR42_RS36125 - IclR family transcriptional regulator, at 3,553,145 to 3,553,993
_RS36125
RR42_RS36130: RR42_RS36130 - phytanoyl-CoA dioxygenase, at 3,554,007 to 3,554,855
_RS36130
RR42_RS36135: RR42_RS36135 - ATPase AAA, at 3,555,068 to 3,555,988
_RS36135
RR42_RS36140: RR42_RS36140 - hypothetical protein, at 3,555,995 to 3,557,041
_RS36140
Group
Condition
RR42
_RS36120
RR42
_RS36125
RR42
_RS36130
RR42
_RS36135
RR42
_RS36140
stress
R2A with Cisplatin 0.001 mg/ml
-1.9
+0.1
-0.1
-0.1
-0.4
stress
R2A with Bacitracin 0.5 mg/ml
-1.0
-0.4
-0.3
-0.3
-0.3
nitrogen source
L-Threonine (N)
-0.8
-0.2
-1.4
+0.0
+0.1
carbon source
L-Threonine (C)
-0.5
+0.0
-1.6
+0.2
-0.1
carbon source
L-Asparagine (C)
-0.7
-0.0
-0.9
-0.1
-0.1
lb
LB
-3.5
-0.1
+1.8
-0.0
+0.1
carbon source
D,L-Lactate (C)
-1.2
-0.0
-0.3
-0.1
-0.1
carbon source
L-Asparagine (C)
-0.9
-0.2
-0.6
-0.0
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.6
+0.1
-1.0
-0.1
+0.1
carbon source
succinate (C)
-1.2
-0.2
+0.3
-0.2
+0.0
stress
R2A with Vancomycin 0.5 mg/ml
-1.1
-0.3
+0.3
+0.0
-0.1
stress
R2A with D-Cycloserine 0.01 mg/ml
-0.6
-0.0
-0.8
+0.1
+0.1
carbon source
Carbon source Phenylacetic 2.5 mM
-0.5
+0.2
-1.0
+0.1
+0.3
nitrogen source
nitrite (N)
-0.9
-0.2
+0.6
-0.0
-0.4
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.6
-0.4
+0.8
-0.7
+0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.7
+0.2
+1.0
-0.4
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.4
+0.3
+0.8
-0.3
+0.0
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
+0.0
-0.7
+0.4
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.2
+0.7
+0.1
+0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.2
-0.4
+1.8
-0.4
-0.1
stress
R2A with Sisomicin 0.035 mg/ml
+1.8
-0.2
-0.3
-0.2
+0.1
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.7
+0.2
+0.6
+0.3
-0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.4
-0.2
+1.3
+0.1
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.5
-0.2
+1.4
-0.1
+0.0
stress
R2A with Lomefloxacin 0.00075 mM
+1.1
+0.0
+0.3
+0.3
-0.1
carbon source
Disodium Glutarate (C)
+0.1
+2.2
+0.2
-0.2
-0.0
carbon source
Protocatechuic Acid (C)
+0.6
+0.7
+1.2
+0.2
-0.1
carbon source
Disodium Glutarate (C)
+0.3
+2.2
+0.3
+0.0
-0.1
carbon source
adipate (C)
-0.5
+7.4
+0.2
-0.3
-0.2
carbon source
adipate (C)
+0.1
+7.7
+0.4
-0.1
-0.2
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