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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS36045 and RR42_RS36050 overlap by 32 nucleotides
RR42_RS36050 and RR42_RS36055 are separated by 164 nucleotides
RR42_RS36055 and RR42_RS36060 are separated by 409 nucleotides
RR42_RS36060 and RR42_RS36065 are separated by 160 nucleotides
RR42_RS36045: RR42_RS36045 - hypothetical protein, at 3,538,062 to 3,538,850
_RS36045
RR42_RS36050: RR42_RS36050 - hypothetical protein, at 3,538,819 to 3,539,025
_RS36050
RR42_RS36055: RR42_RS36055 - LysR family transcriptional regulator, at 3,539,190 to 3,540,152
_RS36055
RR42_RS36060: RR42_RS36060 - amidase, at 3,540,562 to 3,541,968
_RS36060
RR42_RS36065: RR42_RS36065 - ABC transporter substrate-binding protein, at 3,542,129 to 3,543,085
_RS36065
Group
Condition
RR42
_RS36045
RR42
_RS36050
RR42
_RS36055
RR42
_RS36060
RR42
_RS36065
stress
R2A with Cobalt chloride 0.3 mM
-3.5
-0.3
-0.1
-0.2
-0.2
stress
R2A with Nickel (II) chloride 0.5 mM
-2.8
-0.8
-0.1
+0.1
-0.5
stress
R2A with Cobalt chloride 0.5 mM
-3.3
-0.7
-0.3
+0.2
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
-3.5
+0.1
+0.1
+0.1
-0.0
stress
R2A with Nickel (II) chloride 0.25 mM
-2.0
-0.5
+0.2
-0.2
-0.4
stress
R2A with Cisplatin 0.001 mg/ml
-1.3
-0.0
+0.0
-0.2
-1.0
stress
R2A with nitrate 150 mM
-1.5
-0.2
+0.0
-0.3
+0.0
stress
R2A with Lomefloxacin 0.001 mM
+0.0
-0.3
-0.6
-0.4
-0.6
stress
R2A with Nickel (II) chloride 0.35 mM
-1.5
-0.0
+0.0
-0.3
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-1.2
-0.3
-0.0
-0.1
+0.2
temperature
R2A 37C
-0.3
-0.1
-0.1
-0.3
-0.6
nitrogen source
L-Glutamine (N)
-0.3
-1.2
-0.1
+0.2
+0.0
carbon source
Protocatechuic Acid (C)
-0.7
-0.2
-0.5
-0.0
+0.1
stress
R2A with Chloride 300 mM
-0.5
+0.0
-0.1
-0.5
+0.4
carbon source
Carbon source D,L-Lactate 10 mM
-0.5
+0.2
-0.2
-0.3
+0.3
stress
R2A with Chlorite 4 mM
-0.9
+0.4
-0.0
-0.0
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.7
+0.5
-0.1
-0.4
-0.7
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.8
+0.1
-0.5
+0.1
-0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.9
-0.2
-0.1
-0.1
-0.1
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.4
-0.3
-0.3
+0.1
+0.5
carbon source
adipate (C)
+0.2
+0.6
-0.1
+0.2
-0.5
stress
R2A with Vancomycin 0.5 mg/ml
+0.4
+0.3
+0.2
-0.2
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.8
-0.4
+0.2
-0.4
+0.4
carbon source
Valeric (C)
+0.4
+0.7
-0.0
-0.2
-0.2
nitrogen source
L-Tryptophan (N)
+0.5
-0.3
+0.2
+0.3
+0.2
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.9
-0.0
-0.1
-0.3
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
+0.9
+0.4
-0.0
+0.0
+0.1
stress
R2A with D-Cycloserine 0.5 mg/ml
+1.8
-0.0
+0.1
-0.2
+0.1
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.2
+0.9
-0.2
-0.1
-0.5
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+3.6
+0.5
-0.4
-0.1
-0.2
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RR42_RS36055
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