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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35990 and RR42_RS35995 are separated by 38 nucleotides
RR42_RS35995 and RR42_RS36000 are separated by 61 nucleotides
RR42_RS36000 and RR42_RS36005 are separated by 82 nucleotides
RR42_RS36005 and RR42_RS36010 are separated by 87 nucleotides
RR42_RS35990: RR42_RS35990 - pilus assembly protein, at 3,522,390 to 3,523,607
_RS35990
RR42_RS35995: RR42_RS35995 - membrane protein, at 3,523,646 to 3,525,043
_RS35995
RR42_RS36000: RR42_RS36000 - pilus assembly protein CpaB, at 3,525,105 to 3,526,076
_RS36000
RR42_RS36005: RR42_RS36005 - pilus assembly protein TadG, at 3,526,159 to 3,526,623
_RS36005
RR42_RS36010: RR42_RS36010 - peptidase, at 3,526,711 to 3,527,214
_RS36010
Group
Condition
RR42
_RS35990
RR42
_RS35995
RR42
_RS36000
RR42
_RS36005
RR42
_RS36010
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.6
-0.6
-0.3
-0.7
stress
R2A with Lomefloxacin 0.00075 mM
-0.5
-0.8
-0.1
+0.1
-0.9
carbon source
Disodium Glutarate (C)
+0.1
-1.2
-0.1
-0.4
-0.5
carbon source
Suberic (C)
-0.4
-0.1
-0.3
-1.0
-0.2
stress
R2A with Sisomicin 0.035 mg/ml
+0.3
-0.4
-0.7
-0.2
-0.9
stress
R2A with Vancomycin 0.5 mg/ml
+0.3
-0.8
-0.0
-0.5
-0.8
stress
R2A with nitrate 200 mM
-0.8
-0.2
-0.2
+0.2
-0.5
carbon source
propionate (C)
-0.2
+0.4
-0.5
-0.5
-0.4
stress
R2A with Cobalt chloride 0.5 mM
+0.2
-0.9
-0.5
-0.2
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.5
+0.2
-0.4
-0.4
-0.2
stress
R2A with Chlorite 4 mM
+0.0
-0.4
+0.3
-0.4
-0.7
stress
R2A with Thallium(I) acetate 0.001 mg/ml
+0.1
-0.8
+0.2
+0.0
-0.6
stress
R2A with Lomefloxacin 0.001 mM
+0.1
-0.8
-0.4
+0.4
-0.4
carbon source
butyrate (C)
-0.3
+0.5
-0.3
-0.5
-0.4
carbon source
L-Threonine (C)
+0.1
-0.0
+0.4
-0.2
-1.0
carbon source
pyruvate (C)
-0.3
+0.7
-0.3
-0.2
-0.6
carbon source
4-Hydroxybenzoic Acid (C)
+0.5
+0.2
-0.5
-0.1
-0.7
carbon source
L-Malic (C)
+0.6
-0.6
+0.1
-0.1
-0.6
stress
R2A with Zinc 0.1 mM
+0.6
-0.8
-0.1
+0.0
-0.3
stress
R2A with D-Cycloserine 0.5 mg/ml
+0.7
-0.7
+0.2
-0.4
-0.4
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.5
-0.5
+0.4
-0.1
-0.7
carbon source
L-Lactate (C)
+0.5
-0.2
+0.3
-0.4
-0.5
carbon source
Suberic (C)
-0.3
-0.2
+0.1
-0.4
+0.7
nitrogen source
L-Lysine (N)
-0.5
+0.8
-0.3
-0.0
+0.2
nitrogen source
L-Isoleucine (N)
+0.2
+0.7
-0.1
+0.1
-0.6
lb
LB
+0.4
+0.4
+0.3
-1.1
+0.4
carbon source
D-Lactate (C)
-0.3
+1.0
+0.2
-0.3
+0.3
carbon source
4-Hydroxybenzoic Acid (C)
+0.2
+0.9
-0.5
+0.4
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.1
+0.9
+0.2
-0.2
+0.4
nitrogen source
L-Leucine (N)
+0.6
+0.6
-0.0
+0.5
+0.3
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