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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35750 and RR42_RS35755 are separated by 40 nucleotides
RR42_RS35755 and RR42_RS35760 are separated by 171 nucleotides
RR42_RS35760 and RR42_RS35765 are separated by 13 nucleotides
RR42_RS35765 and RR42_RS35770 overlap by 4 nucleotides
RR42_RS35750: RR42_RS35750 - DNA-directed RNA polymerase sigma-70 factor, at 3,467,639 to 3,468,355
_RS35750
RR42_RS35755: RR42_RS35755 - flagellar biosynthesis protein FlhG, at 3,468,396 to 3,469,172
_RS35755
RR42_RS35760: RR42_RS35760 - flagellar biosynthesis regulator FlhF, at 3,469,344 to 3,471,659
_RS35760
RR42_RS35765: RR42_RS35765 - flagellar biosynthesis protein FlhA, at 3,471,673 to 3,473,760
_RS35765
RR42_RS35770: RR42_RS35770 - flagellar biosynthesis protein FlhB, at 3,473,757 to 3,474,899
_RS35770
Group
Condition
RR42
_RS35750
RR42
_RS35755
RR42
_RS35760
RR42
_RS35765
RR42
_RS35770
nitrogen source
casaminos (N)
-0.7
-0.2
-0.3
-0.3
-1.2
nitrogen source
L-Serine (N)
-0.5
-0.7
-0.5
-0.1
-0.6
stress
R2A with Cephalothin 0.25 mg/ml
-0.5
-0.6
-0.5
-0.0
-0.6
nitrogen source
Glucuronamide (N)
-0.6
-0.5
-0.4
-0.3
-0.3
stress
R2A with Zinc 0.1 mM
+0.1
-0.3
-0.6
-0.3
-0.9
nitrogen source
L-Glutamine (N)
-0.3
-0.2
-0.5
-0.2
-0.7
stress
R2A with nitrate 200 mM
-0.2
-0.4
-0.2
-0.2
-0.6
temperature
R2A 23C
-0.1
-0.5
-0.2
-0.3
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.0
-0.6
-0.2
-0.3
-0.3
temperature
R2A 23C
-0.0
-0.4
-0.3
-0.5
-0.1
carbon source
Octanoic (C)
+0.0
-0.7
+0.0
-0.2
-0.5
stress
R2A with Chloride 300 mM
+0.1
+0.2
-0.3
-0.5
-0.6
stress
R2A with D-Cycloserine 0.5 mg/ml
-0.2
-0.1
+0.2
-0.2
-0.5
nitrogen source
L-Phenylalanine (N)
-0.8
+0.0
-0.1
+0.2
-0.2
carbon source
Protocatechuic Acid (C)
+0.1
-0.5
-0.3
-0.3
+0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.3
-0.8
-0.4
+0.3
+0.6
carbon source
Hexanoic (C)
+0.4
-0.5
-0.2
+0.1
-0.3
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
-0.3
+0.2
-0.3
-0.4
+0.3
carbon source
Dodecandioic (C)
+0.4
-0.6
+0.1
+0.0
-0.4
carbon source
L-Glutamine (C)
+0.4
-0.3
+0.2
-0.1
-0.5
stress
R2A with Nickel (II) chloride 0.35 mM
-0.3
-0.4
-0.4
+0.1
+0.8
stress
R2A with Nickel (II) chloride 0.35 mM
+0.0
+0.5
-0.1
+0.1
+0.7
carbon source
adipate (C)
-0.2
+0.2
+0.5
+0.3
+0.5
stress
R2A with nitrate 200 mM
-0.1
+0.1
+0.2
+0.2
+0.8
stress
R2A with nitrate 150 mM
+0.4
+0.3
+0.3
-0.1
+0.5
stress
R2A with Nickel (II) chloride 0.25 mM
+0.3
+0.3
+0.4
+0.1
+0.5
lb
LB
+0.2
+0.4
+0.2
+0.6
+0.3
stress
R2A with Cobalt chloride 0.3 mM
+0.2
+0.3
+0.4
+0.4
+1.0
carbon source
adipate (C)
+0.2
+0.7
+0.4
+0.5
+1.1
stress
R2A with Nickel (II) chloride 0.5 mM
+0.6
+0.5
+0.1
+0.6
+1.4
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