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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35660 and RR42_RS35665 overlap by 2 nucleotides
RR42_RS35665 and RR42_RS35670 are separated by 21 nucleotides
RR42_RS35670 and RR42_RS35675 are separated by 503 nucleotides
RR42_RS35675 and RR42_RS35680 are separated by 37 nucleotides
RR42_RS35660: RR42_RS35660 - hypothetical protein, at 3,452,708 to 3,453,019
_RS35660
RR42_RS35665: RR42_RS35665 - hypothetical protein, at 3,453,018 to 3,453,284
_RS35665
RR42_RS35670: RR42_RS35670 - cytochrome B oxidoreductase, at 3,453,306 to 3,453,857
_RS35670
RR42_RS35675: RR42_RS35675 - flagellar hook protein FlgL, at 3,454,361 to 3,455,593
_RS35675
RR42_RS35680: RR42_RS35680 - flagellar hook protein FlgK, at 3,455,631 to 3,457,544
_RS35680
Group
Condition
RR42
_RS35660
RR42
_RS35665
RR42
_RS35670
RR42
_RS35675
RR42
_RS35680
carbon source
Protocatechuic Acid (C)
-0.4
-0.3
-0.3
-0.2
-0.1
carbon source
adipate (C)
-0.1
-0.4
-0.5
+0.0
-0.1
carbon source
Protocatechuic Acid (C)
-0.1
-0.4
-0.3
+0.1
-0.3
stress
R2A with Nickel (II) chloride 0.35 mM
-1.1
+0.4
+0.1
-0.1
-0.3
carbon source
L-Proline (C)
-0.4
+0.2
-0.3
-0.3
-0.0
stress
R2A with Zinc 0.1 mM
-0.9
-0.1
+0.4
-0.1
+0.0
temperature
R2A 23C
-0.3
-0.1
+0.2
-0.3
-0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.6
+0.0
+0.2
+0.1
-0.2
temperature
R2A 23C
+0.2
-0.1
+0.0
-0.4
-0.2
carbon source
4-Hydroxybenzoic Acid (C)
-0.2
-0.1
-0.4
+0.2
+0.1
carbon source
L-Tryptophan (C)
-0.2
+0.3
-0.4
+0.1
-0.0
stress
R2A with nitrate 200 mM
-0.3
-0.5
+0.4
+0.2
-0.0
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.6
+0.4
-0.4
+0.3
+0.3
carbon source
L-Lactate (C)
-0.3
+0.4
-0.2
-0.0
+0.1
carbon source
L-Leucine (C)
+0.5
-0.1
-0.3
+0.1
+0.0
nitrogen source
D-Alanine (N)
-0.4
+0.2
+0.4
-0.0
+0.1
stress
R2A with Cobalt chloride 0.5 mM
+0.3
-0.0
+0.4
-0.4
+0.0
carbon source
Suberic (C)
+0.2
+0.2
+0.3
-0.3
-0.1
lb
LB
-0.8
-0.0
+0.6
+0.7
-0.2
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
-0.4
+0.1
+0.4
+0.2
+0.1
nitrogen source
L-Leucine (N)
+0.5
+0.2
-0.3
+0.0
+0.1
carbon source
D-Fructose (C)
+0.4
+0.3
-0.2
+0.2
+0.0
carbon source
adipate (C)
+0.4
-0.1
+0.4
-0.1
+0.1
carbon source
Octanoic (C)
+0.8
-0.2
+0.1
-0.1
-0.0
stress
R2A with sodium fluoride 100 mM
+0.6
+0.2
+0.2
+0.1
-0.1
nitrogen source
L-Leucine (N)
+0.1
-0.0
+0.5
+0.2
+0.3
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.6
+0.3
+0.1
+0.0
+0.1
stress
R2A with Nickel (II) chloride 0.25 mM
+0.6
-0.0
+0.3
+0.2
+0.0
stress
R2A with Cobalt chloride 0.3 mM
+0.9
+0.2
+0.4
-0.0
+0.1
carbon source
L-Asparagine (C)
+0.2
+0.5
+0.4
+0.5
+0.2
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