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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35525 and RR42_RS35530 are separated by 69 nucleotides
RR42_RS35530 and RR42_RS35535 are separated by 807 nucleotides
RR42_RS35535 and RR42_RS35540 are separated by 155 nucleotides
RR42_RS35540 and RR42_RS35545 are separated by 1178 nucleotides
RR42_RS35525: RR42_RS35525 - hypothetical protein, at 3,424,646 to 3,424,864
_RS35525
RR42_RS35530: RR42_RS35530 - hypothetical protein, at 3,424,934 to 3,425,437
_RS35530
RR42_RS35535: RR42_RS35535 - hypothetical protein, at 3,426,245 to 3,426,613
_RS35535
RR42_RS35540: RR42_RS35540 - membrane protein, at 3,426,769 to 3,427,857
_RS35540
RR42_RS35545: RR42_RS35545 - PhoU family transcriptional regulator, at 3,429,036 to 3,429,764
_RS35545
Group
Condition
RR42
_RS35525
RR42
_RS35530
RR42
_RS35535
RR42
_RS35540
RR42
_RS35545
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.3
-0.2
-0.4
+0.1
-0.1
lb
LB
-0.1
-0.3
+0.1
-0.1
-0.3
r2a
R2A
+0.0
-0.3
-0.3
-0.2
-0.1
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.2
-0.3
+0.1
-0.0
-0.3
nitrogen source
L-Citrulline (N)
-0.3
-0.4
+0.1
+0.1
+0.1
oxygen_nitrate
exometabolites; 5% oxygen; 5 mM nitrate
-0.0
+0.2
-0.5
+0.1
-0.0
stress
R2A with Cobalt chloride 0.3 mM
-0.2
+0.3
+0.2
-0.2
-0.3
stress
R2A with Cisplatin 0.001 mg/ml
+0.3
-0.3
+0.2
+0.1
-0.4
stress
R2A with Nickel (II) chloride 0.35 mM
-0.1
-0.4
+0.3
-0.0
+0.0
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.1
+0.1
+0.1
+0.1
-0.4
carbon source
Hexanoic (C)
-0.1
+0.1
+0.2
+0.1
-0.2
nitrogen source
L-Threonine (N)
-0.2
+0.3
+0.1
-0.1
+0.0
carbon source
Suberic (C)
-0.2
+0.2
+0.3
-0.1
+0.2
carbon source
L-Lactate (C)
-0.2
+0.1
+0.4
+0.1
-0.0
stress
R2A with Doxycycline hyclate 0.0001 mg/ml
+0.2
-0.2
+0.3
-0.1
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.3
+0.0
-0.0
+0.3
-0.2
carbon source
Pimelic (C)
+0.1
-0.1
+0.3
+0.1
+0.1
carbon source
L-Tryptophan (C)
+0.2
+0.2
+0.3
+0.1
-0.1
carbon source
Valeric (C)
+0.5
-0.1
+0.2
+0.1
-0.0
carbon source
Protocatechuic Acid (C)
+0.5
+0.1
-0.0
+0.1
+0.1
nitrogen source
L-Serine (N)
+0.2
+0.1
+0.2
+0.1
+0.2
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.2
+0.3
+0.3
+0.0
+0.1
nitrogen source
L-Glutamine (N)
+0.2
+0.1
+0.1
+0.3
+0.2
carbon source
Suberic (C)
+0.1
+0.4
+0.2
+0.2
-0.0
nitrogen source
D-Alanine (N)
+0.2
+0.0
+0.3
+0.2
+0.3
nitrogen source
D-Alanine (N)
+0.1
+0.4
+0.3
+0.2
+0.2
carbon source
succinate (C)
+0.2
+0.3
+0.3
+0.3
+0.1
carbon source
L-Asparagine (C)
+0.2
+0.4
+0.4
+0.2
+0.3
carbon source
L-Asparagine (C)
+0.2
+0.2
+0.5
+0.3
+0.2
temperature
R2A 37C
+0.4
+0.5
+0.3
+0.1
+0.3
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RR42_RS35535
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