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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35490 and RR42_RS35495 are separated by 292 nucleotides
RR42_RS35495 and RR42_RS35500 are separated by 122 nucleotides
RR42_RS35500 and RR42_RS35505 are separated by 6 nucleotides
RR42_RS35505 and RR42_RS35510 are separated by 333 nucleotides
RR42_RS35490: RR42_RS35490 - XRE family transcriptional regulator, at 3,413,364 to 3,414,026
_RS35490
RR42_RS35495: RR42_RS35495 - hypothetical protein, at 3,414,319 to 3,415,734
_RS35495
RR42_RS35500: RR42_RS35500 - hypothetical protein, at 3,415,857 to 3,416,798
_RS35500
RR42_RS35505: RR42_RS35505 - acriflavin resistance protein, at 3,416,805 to 3,419,912
_RS35505
RR42_RS35510: RR42_RS35510 - membrane protein, at 3,420,246 to 3,421,310
_RS35510
Group
Condition
RR42
_RS35490
RR42
_RS35495
RR42
_RS35500
RR42
_RS35505
RR42
_RS35510
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
-0.2
-0.1
-0.9
+0.0
+0.1
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.2
-0.3
-0.2
-0.3
-0.3
stress
R2A with Nickel (II) chloride 0.25 mM
+0.0
-0.3
-0.5
-0.1
-0.0
stress
R2A with nitrate 200 mM
-0.5
-0.1
-0.2
+0.1
+0.0
carbon source
Protocatechuic Acid (C)
+0.3
-0.1
-0.1
+0.2
-0.6
nitrogen source
L-Leucine (N)
+0.1
-0.1
+0.3
-0.1
-0.3
carbon source
adipate (C)
+0.3
-0.2
+0.0
+0.1
-0.2
carbon source
Suberic (C)
-0.2
+0.5
+0.1
-0.1
-0.3
carbon source
Ethanol (C)
-0.2
-0.1
+0.4
-0.1
+0.1
carbon source
Pimelic (C)
-0.1
+0.2
+0.3
-0.1
-0.3
carbon source
Octanoic (C)
+0.0
+0.1
+0.4
-0.1
-0.3
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
+0.5
+0.1
-0.2
+0.1
-0.4
carbon source
Carbon source Deoxyribonucleic from herring sperm 10 mg/mL
-0.4
+0.3
-0.0
-0.0
+0.3
carbon source
Protocatechuic Acid (C)
-0.4
+0.7
+0.2
+0.0
-0.4
oxygen_nitrate
exometabolites; 10% oxygen; 5 mM nitrate
+0.2
+0.2
+0.2
-0.1
-0.2
nitrogen source
L-Glutamine (N)
-0.1
-0.1
+0.1
+0.1
+0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.4
+0.2
+0.5
+0.0
+0.2
stress
R2A with Polymyxin B sulfate 0.005 mg/ml
+0.1
-0.0
+0.5
+0.0
-0.2
carbon source
Carbon source Deoxyribonucleic from herring sperm 5 mg/mL
+0.7
-0.1
+0.4
-0.1
-0.1
stress
R2A with Cisplatin 0.001 mg/ml
+0.0
+0.3
+0.2
-0.1
+0.3
carbon source
Dodecandioic (C)
+0.6
+0.3
-0.0
-0.1
-0.0
nitrogen source
Glucuronamide (N)
+0.3
+0.0
+0.2
+0.2
+0.2
carbon source
Carbon source 2-Deoxyadenosine 5-monophosphate 5 mM
+0.1
-0.1
+0.2
+0.3
+0.4
stress
R2A with Thallium(I) acetate 0.001 mg/ml
-0.0
+0.3
+0.7
+0.1
-0.1
carbon source
L-Asparagine (C)
+0.4
+0.0
+0.4
+0.1
+0.2
nitrogen source
casaminos (N)
+0.3
+0.1
+0.4
+0.2
+0.1
stress
R2A with Paraquat dichloride 0.064 mg/ml
+0.4
+0.1
+0.3
+0.1
+0.4
carbon source
L-Asparagine (C)
+0.2
+0.2
+0.5
+0.3
+0.3
stress
R2A with Nickel (II) chloride 0.35 mM
+0.4
+0.5
+0.3
+0.4
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.5
+0.5
+0.3
+0.2
+0.3
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RR42_RS35500
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