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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Cupriavidus basilensis FW507-4G11
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
RR42_RS35470 and RR42_RS35475 are separated by 343 nucleotides
RR42_RS35475 and RR42_RS35480 are separated by 420 nucleotides
RR42_RS35480 and RR42_RS35485 are separated by 110 nucleotides
RR42_RS35485 and RR42_RS35490 overlap by 25 nucleotides
RR42_RS35470: RR42_RS35470 - hypothetical protein, at 3,408,742 to 3,409,089
_RS35470
RR42_RS35475: RR42_RS35475 - thiosulfate sulfurtransferase, at 3,409,433 to 3,410,305
_RS35475
RR42_RS35480: RR42_RS35480 - MFS transporter, at 3,410,726 to 3,411,925
_RS35480
RR42_RS35485: RR42_RS35485 - hypothetical protein, at 3,412,036 to 3,413,388
_RS35485
RR42_RS35490: RR42_RS35490 - XRE family transcriptional regulator, at 3,413,364 to 3,414,026
_RS35490
Group
Condition
RR42
_RS35470
RR42
_RS35475
RR42
_RS35480
RR42
_RS35485
RR42
_RS35490
stress
R2A with nitrate 200 mM
-0.0
-0.2
-0.0
-0.2
-0.5
stress
R2A with Cobalt chloride 0.5 mM
-0.2
+0.3
+0.1
-0.8
-0.4
carbon source
adipate (C)
-0.0
+0.5
-0.2
-1.2
+0.1
stress
R2A with Nickel (II) chloride 0.5 mM
-0.2
-0.3
-0.2
-0.3
+0.3
lb
LB
-0.5
-0.0
+0.3
-0.3
-0.0
carbon source
adipate (C)
-0.1
+0.3
+0.1
-1.1
+0.3
stress
R2A with nitrate 150 mM
+0.3
+0.1
-0.0
-0.5
-0.3
carbon source
a-Ketoglutaric (C)
+0.1
+0.4
+0.0
-0.5
-0.1
carbon source
Trisodium citrate (C)
-0.2
-0.2
+0.2
-0.2
+0.4
carbon source
Pimelic (C)
-0.2
+0.5
-0.1
-0.2
-0.1
carbon source
L-Leucine (C)
+0.2
+0.4
-0.1
-0.3
-0.1
carbon source
Protocatechuic Acid (C)
+0.3
+0.2
-0.0
-0.1
-0.4
carbon source
Carbon source 2-Deoxy-D-Ribose 20 mM
-0.0
-0.6
+0.1
+0.1
+0.5
nitrogen source
L-Threonine (N)
-0.2
+0.4
+0.3
-0.1
-0.2
stress
R2A with Nickel (II) chloride 0.35 mM
-0.2
-0.1
+0.3
-0.1
+0.4
stress
R2A with Zinc 0.1 mM
-0.1
-0.1
+0.3
-0.1
+0.3
carbon source
Azelaic (C)
+0.1
+0.4
-0.1
+0.3
-0.2
nitrogen source
L-Leucine (N)
+0.2
+0.5
+0.2
-0.1
-0.2
nitrogen source
Glycine (N)
+0.4
-0.2
+0.2
+0.3
+0.3
nitrogen source
D-Alanine (N)
+0.2
+0.6
+0.2
-0.0
+0.1
nitrogen source
Glucuronamide (N)
+0.3
+0.2
+0.3
-0.1
+0.3
carbon source
Dodecandioic (C)
-0.0
+0.2
+0.2
+0.0
+0.6
r2a
R2A
+0.2
+0.1
+0.3
+0.3
+0.1
stress
R2A with Lomefloxacin 0.001 mM
+0.3
-0.3
+0.2
+0.4
+0.5
carbon source
L-Asparagine (C)
-0.0
+0.4
+0.4
+0.3
+0.2
carbon source
succinate (C)
+0.3
+0.3
+0.1
+0.1
+0.3
nitrogen source
L-Serine (N)
+0.4
+0.2
+0.4
+0.1
+0.0
carbon source
L-Asparagine (C)
+0.2
+0.6
+0.2
-0.0
+0.4
nitrogen source
casaminos (N)
+0.4
+0.0
+0.5
+0.3
+0.3
carbon source
Protocatechuic Acid (C)
+0.3
+0.5
+0.2
+0.1
+0.3
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